miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01026;MIR828;AM481109.2/2574-2468 29760:Vitis vinifera
Length = 107
Score = 212 bits (107), Expect = 8e-55
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 4 aaagtttcttgctcaaatgagtattccaaacaacagcttgtgaagcaatgattactgtca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaagtttcttgctcaaatgagtattccaaacaacagcttgtgaagcaatgattactgtca 60
Query: 64 tagtctctgcatgtggattgttgttgagatgctcatttgaggaagca 110
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tagtctctgcatgtggattgttgttgagatgctcatttgaggaagca 107
>RF01026;MIR828;AARH01005110.1/228313-228181 3694:Populus
trichocarpa
Length = 133
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 gtttcttgctcaaatgagtattccaa 32
||||||||||||||||||||||||||
Sbjct: 4 gtttcttgctcaaatgagtattccaa 29
>RF01026;MIR828;AARH01006309.1/115016-115141 3694:Populus
trichocarpa
Length = 126
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 gtttcttgctcaaatgagtattccaa 32
||||||||||||||||||||||||||
Sbjct: 4 gtttcttgctcaaatgagtattccaa 29
>RF01026;MIR828;AASG02025329.1/1452-1398 3988:Ricinus communis
(castor bean)
Length = 55
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 gtttcttgctcaaatgagtattccaa 32
||||||||||||||||||||||||||
Sbjct: 4 gtttcttgctcaaatgagtattccaa 29
>RF01026;MIR828;AC166147.11/114792-114710 3880:Medicago truncatula
(barrel medic)
Length = 83
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 gtttcttgctcaaatgagtattccaa 32
||||||||||||||||||||||||||
Sbjct: 4 gtttcttgctcaaatgagtattccaa 29
>RF01026;MIR828;ABIM01001496.1/3851-3688 3649:Carica papaya
(papaya)
Length = 164
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 tttcttgctcaaatgagtattccaa 32
|||||||||||||||||||||||||
Sbjct: 5 tttcttgctcaaatgagtattccaa 29
>RF01026;MIR828;ABIM01016852.1/28666-28804 3649:Carica papaya
(papaya)
Length = 139
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tcttgctcaaatgagtattcca 31
||||||||||||||||||||||
Sbjct: 7 tcttgctcaaatgagtattcca 28
>RF01026;MIR828;AASG02020204.1/992-1128 3988:Ricinus communis
(castor bean)
Length = 137
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tcttgctcaaatgagtattcca 31
||||||||||||||||||||||
Sbjct: 7 tcttgctcaaatgagtattcca 28
