miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01026;MIR828;CAAP02000421.1/40501-40561 29760:Vitis vinifera
Length = 61
Score = 121 bits (61), Expect = 1e-27
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 5 ttggtttcttgctcaaatgagtgttccacatcaacctggatagtcatttcctgcaaaacc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttggtttcttgctcaaatgagtgttccacatcaacctggatagtcatttcctgcaaaacc 60
Query: 65 a 65
|
Sbjct: 61 a 61
>RF01026;MIR828;AB250300.1/955-853 49675:Trillium camschatcense
Length = 103
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tcttgctcaaatgagtgttcca 32
||||||||||||||||||||||
Sbjct: 7 tcttgctcaaatgagtgttcca 28
>RF01026;MIR828;AARH01005110.1/228313-228181 3694:Populus
trichocarpa
Length = 133
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 8 gtttcttgctcaaatgagtgttcca 32
||||||||||||||||||| |||||
Sbjct: 4 gtttcttgctcaaatgagtattcca 28
>RF01026;MIR828;AARH01006309.1/115016-115141 3694:Populus
trichocarpa
Length = 126
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 8 gtttcttgctcaaatgagtgttcca 32
||||||||||||||||||| |||||
Sbjct: 4 gtttcttgctcaaatgagtattcca 28
>RF01026;MIR828;AASG02025329.1/1452-1398 3988:Ricinus communis
(castor bean)
Length = 55
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 8 gtttcttgctcaaatgagtgttcca 32
||||||||||||||||||| |||||
Sbjct: 4 gtttcttgctcaaatgagtattcca 28
>RF01026;MIR828;AC166147.11/114792-114710 3880:Medicago truncatula
(barrel medic)
Length = 83
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 8 gtttcttgctcaaatgagtgttcca 32
||||||||||||||||||| |||||
Sbjct: 4 gtttcttgctcaaatgagtattcca 28
>RF01026;MIR828;AM481109.2/2574-2468 29760:Vitis vinifera
Length = 107
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 8 gtttcttgctcaaatgagtgttcca 32
||||||||||||||||||| |||||
Sbjct: 4 gtttcttgctcaaatgagtattcca 28
