miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 85.7 bits (43), Expect = 2e-16
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 29 atatgcctggctccctgtatgccactcgcgtagctgccaacaactca 75
||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgccactcgcttagctgccaacaactca 47
Score = 77.8 bits (39), Expect = 5e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 103 acgttggctctaccgcggatggcgtgcgaggagccaagcatga 145
||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 64 acgttggctctactgcggatggcgtgcgaggagccaagcatga 106
>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
Indica Group
Length = 136
Score = 79.8 bits (40), Expect = 1e-14
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 29 atatgcctggctccctgtatgccactcgcgtagctgccaa 68
||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgccactcgcgtagctgccaa 40
Score = 71.9 bits (36), Expect = 3e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 106 ttggctctaccgcggatggcgtgcgaggagccaagcatga 145
|||||||||| |||||||||||||||||||||||||||||
Sbjct: 97 ttggctctactgcggatggcgtgcgaggagccaagcatga 136
>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
Length = 85
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 29 atatgcctggctccctgtatgccactcgc 57
|||||||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgccactcgc 29
>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 29 atatgcctggctccctgtatgccactcgc 57
|||||||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgccactcgc 29
>RF00247;mir-160;AY551220.1/23-122 4530:Oryza sativa (rice)
Length = 100
Score = 58.0 bits (29), Expect = 4e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 29 atatgcctggctccctgtatgccactcgcgtagctgccaac 69
||||||||||||||||||||||| ||||| | |||||||||
Sbjct: 1 atatgcctggctccctgtatgccgctcgcatggctgccaac 41
>RF00247;mir-160;EU970393.1/2-98 4577:Zea mays
Length = 97
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 104 cgttggctctaccgcggatggcgtgcgaggagccaa 139
||||||||| || |||||||||||||||||||||||
Sbjct: 62 cgttggctccactgcggatggcgtgcgaggagccaa 97
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 35 ctggctccctgtatgccactcgcgtagctgccaac 69
||||||||||||||||||||||| | |||||||||
Sbjct: 1 ctggctccctgtatgccactcgcatggctgccaac 35
>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
Length = 86
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 116 cgcggatggcgtgcgaggagccaagcatg 144
||||||||||||||||||||||| |||||
Sbjct: 57 cgcggatggcgtgcgaggagccatgcatg 85
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 atgcctggctccctgtatgcca 52
||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgcca 24
>RF00247;mir-160;DQ455766.1/101-12 169985:Oenocarpus bataua
Length = 90
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 111 tctaccgcggatggcgtgcgaggagccaagcat 143
||||| |||| ||||||||||||||||||||||
Sbjct: 56 tctacggcgggtggcgtgcgaggagccaagcat 88
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgcctggctccctgtatgccact 54
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccact 26
>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
(papaya)
Length = 88
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 30 tatgcctggctccctgtatgccac 53
||||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgccac 25
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 122 tggcgtgcgaggagccaagcatg 144
|||||||||||||||||||||||
Sbjct: 65 tggcgtgcgaggagccaagcatg 87
>RF00247;mir-160;EU548646.1/366-280 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 30 tatgcctggctccctgtatgccac 53
||||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgccac 25
>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
trichocarpa
Length = 90
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 30 tatgcctggctccctgtatgccac 53
||||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgccac 25
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 122 tggcgtgcgaggagccaagcat 143
||||||||||||||||||||||
Sbjct: 67 tggcgtgcgaggagccaagcat 88
>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
Length = 89
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 30 tatgcctggctccctgtatgccac 53
||||||||||||||||||||||||
Sbjct: 1 tatgcctggctccctgtatgccac 24
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 122 tggcgtgcgaggagccaagcat 143
||||||||||||||||||||||
Sbjct: 67 tggcgtgcgaggagccaagcat 88
>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
(castor bean)
Length = 90
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 30 tatgcctggctccctgtatgccac 53
||||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgccac 25
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 122 tggcgtgcgaggagccaagcat 143
||||||||||||||||||||||
Sbjct: 67 tggcgtgcgaggagccaagcat 88
>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
Length = 89
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 atatgcctggctccctgtatgcca 52
||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcca 24
>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
Length = 86
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 atatgcctggctccctgtatgcca 52
||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcca 24
>RF00247;mir-160;ABXC01004530.1/55208-55296 4558:Sorghum bicolor
(sorghum)
Length = 89
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 32 tgcctggctccctgtatgccactc 55
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccactc 27
>RF00247;mir-160;EU798771.1/193-98 58934:Zizania latifolia
Length = 96
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 32 tgcctggctccctgtatgccactc 55
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccactc 27
>RF00247;mir-160;AAAA02022910.1/14752-14660 39946:Oryza sativa
Indica Group
Length = 93
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 32 tgcctggctccctgtatgccactc 55
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccactc 27
>RF00247;mir-160;AAAA02020747.1/14884-14971 39946:Oryza sativa
Indica Group
Length = 88
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 32 tgcctggctccctgtatgccactc 55
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccactc 27
>RF00247;mir-160;AC189245.2/87285-87372 51351:Brassica rapa subsp.
pekinensis
Length = 88
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 atgcctggctccctgtatgccac 53
|||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgccac 25
>RF00247;mir-160;AC183492.1/98297-98383 3712:Brassica oleracea
Length = 87
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 atgcctggctccctgtatgccac 53
|||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgccac 25
>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 tatgcctggctccctgtatgcca 52
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;CAAP02006197.1/486-575 29760:Vitis vinifera
Length = 90
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 117 gcggatggcgtgcgaggagccaagcat 143
|||| ||||||||||||||||||||||
Sbjct: 62 gcgggtggcgtgcgaggagccaagcat 88
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgcctggctccctgtatgccac 53
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgcctggctccctgtatgccact 54
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccact 26
>RF00247;mir-160;ABIM01017407.1/6156-6071 3649:Carica papaya
(papaya)
Length = 86
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 atgcctggctccctgtatgcca 52
||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgcca 24
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 119 ggatggcgtgcgaggagccaagcatg 144
|||||||||||||||||||| |||||
Sbjct: 60 ggatggcgtgcgaggagccatgcatg 85
>RF00247;mir-160;Z97344.2/54320-54406 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgcctggctccctgtatgccac 53
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;FM878703.1/301-387 213592:Musa acuminata subsp.
burmannicoides
Length = 87
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgcctggctccctgtatgccac 53
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;EU974767.1/328-419 4577:Zea mays
Length = 92
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgcctggctccctgtatgccac 53
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;EU975926.1/304-390 4577:Zea mays
Length = 87
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgcctggctccctgtatgccac 53
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;ABXC01002436.1/220577-220488 4558:Sorghum bicolor
(sorghum)
Length = 90
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgcctggctccctgtatgccac 53
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;AAAA02005231.1/55127-55040 39946:Oryza sativa
Indica Group
Length = 88
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgcctggctccctgtatgccac 53
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;ABEU01007064.1/27442-27356 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgcctggctccctgtatgccac 53
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
