miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AY551219.1/24-109 4530:Oryza sativa (rice)
Length = 86
Score = 73.8 bits (37), Expect = 6e-13
Identities = 74/85 (87%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 30 ctgcctggctccctgaatgccatctgagaagcacaccaccgtgcctggcgtggctcctgg 89
|||||||||||||||||||||||| ||||||| || | ||| | ||| || ||||||
Sbjct: 3 ctgcctggctccctgaatgccatccgagaagcgtgccgctgtggccggc-tgcttcctgg 61
Query: 90 ttggcattgagggagtcatgcaggg 114
|||||||||||||||||||||||||
Sbjct: 62 ttggcattgagggagtcatgcaggg 86
>RF00247;mir-160;AC161399.2/100084-100170 3880:Medicago truncatula
(barrel medic)
Length = 87
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgaatgccatctgagaagc 61
|||||||||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgaatgccatctgagaagc 34
>RF00247;mir-160;ABXC01005049.1/42369-42278 4558:Sorghum bicolor
(sorghum)
Length = 92
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 75 tggcgtggctcctggttggcattgagggagtcatgcagg 113
||||||| |||| ||||||| ||||||||||||||||||
Sbjct: 53 tggcgtgcctcccggttggcgttgagggagtcatgcagg 91
