miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 73.8 bits (37), Expect = 5e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 1 gcctgggcgcagtggtttatcgatcctttccctgccttgtg 41
|||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gcctgggcgcagtggtttatcgatcccttccctgccttgtg 41
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 100 gcgggaatcgatcgataaacctctgcatcc 129
||||||||||||||||||||||||||||||
Sbjct: 126 gcgggaatcgatcgataaacctctgcatcc 155
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 73.8 bits (37), Expect = 5e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 1 gcctgggcgcagtggtttatcgatcctttccctgccttgtg 41
|||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gcctgggcgcagtggtttatcgatcccttccctgccttgtg 41
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 100 gcgggaatcgatcgataaacctctgcatcc 129
||||||||||||||||||||||||||||||
Sbjct: 127 gcgggaatcgatcgataaacctctgcatcc 156
>RF00742;MIR162_2;AACV01010015.1/69608-69724 39947:Oryza sativa
Japonica Group
Length = 117
Score = 69.9 bits (35), Expect = 8e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 1 gcctgggcgcagtggtttatcgatcctttccctgccttgtgct 43
||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 gcctgggcgcagtggtttatcgatctcttccctgccttgtgct 43
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 103 ggaatcgatcgataaacctctgcatcc 129
||||||||||||||| |||||||||||
Sbjct: 88 ggaatcgatcgataagcctctgcatcc 114
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 60.0 bits (30), Expect = 8e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 3 ctgggcgcagtggtttatcgatcctttccctgccttgtgcta 44
||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 3 ctgggcgcagtggtttatcgatctcttccttgccttgtgcta 44
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 100 gcgggaatcgatcgataaacctctgcatcc 129
||||||||||||||||||||||||||||||
Sbjct: 100 gcgggaatcgatcgataaacctctgcatcc 129
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 3 ctgggcgcagtggtttatcgatcctttccctgccttgtgct 43
||||||||||||||||||||||| |||| |||||||||||
Sbjct: 3 ctgggcgcagtggtttatcgatctcttccttgccttgtgct 43
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 100 gcgggaatcgatcgataaacctctgcatcc 129
|||||||||| |||||||||||||||||||
Sbjct: 101 gcgggaatcggtcgataaacctctgcatcc 130
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 104 gaatcgatcgataaacctctgcatcc 129
||||||||||||||||||||||||||
Sbjct: 63 gaatcgatcgataaacctctgcatcc 88
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 104 gaatcgatcgataaacctctgcatcc 129
||||||||||||||||||||||||||
Sbjct: 63 gaatcgatcgataaacctctgcatcc 88
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 104 gaatcgatcgataaacctctgcatcc 129
||||||||||||||||||||||||||
Sbjct: 68 gaatcgatcgataaacctctgcatcc 93
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 104 gaatcgatcgataaacctctgcatcc 129
|||| |||||||||||||||||||||
Sbjct: 60 gaatagatcgataaacctctgcatcc 85
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 108 cgatcgataaacctctgcatcc 129
||||||||||||||||||||||
Sbjct: 67 cgatcgataaacctctgcatcc 88
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 108 cgatcgataaacctctgcatcc 129
||||||||||||||||||||||
Sbjct: 67 cgatcgataaacctctgcatcc 88
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 104 gaatcgatcgataaacctctgcatcc 129
|||||| |||||||||||||||||||
Sbjct: 62 gaatcggtcgataaacctctgcatcc 87
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 104 gaatcgatcgataaacctctgcatcc 129
|||||| |||||||||||||||||||
Sbjct: 60 gaatcggtcgataaacctctgcatcc 85
