miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;AP004257.3/77813-77720 39947:Oryza sativa Japonica
Group
Length = 94
Score = 73.8 bits (37), Expect = 5e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 71 gccgggttgcagcatgtgcgctccttctccagcatggcttc 111
||||| |||||||||||||||||||||||||||||||||||
Sbjct: 54 gccggcttgcagcatgtgcgctccttctccagcatggcttc 94
>RF00647;MIR164;ABXC01002969.1/79278-79187 4558:Sorghum bicolor
(sorghum)
Length = 92
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 24 caaaccttgctggagaagcagggcacgtgct 54
|||||| ||||||||||||||||||||||||
Sbjct: 1 caaaccgtgctggagaagcagggcacgtgct 31
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 79 gcagcatgtgcgctccttctccagcatggcttc 111
|||||| |||||||||||||||| |||||||||
Sbjct: 60 gcagcacgtgcgctccttctccaacatggcttc 92
>RF00647;MIR164;FM162585.1/105-191 3451:Aquilegia vulgaris
Length = 87
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 28 ccttgctggagaagcagggcacgtgc 53
||||||||||||||||||||||||||
Sbjct: 5 ccttgctggagaagcagggcacgtgc 30
>RF00647;MIR164;AC189657.2/5377-5278 51351:Brassica rapa subsp.
pekinensis
Length = 100
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 29 cttgctggagaagcagggcacgtgc 53
|||||||||||||||||||||||||
Sbjct: 6 cttgctggagaagcagggcacgtgc 30
>RF00647;MIR164;AC189579.2/50985-50886 51351:Brassica rapa subsp.
pekinensis
Length = 100
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 29 cttgctggagaagcagggcacgtgc 53
|||||||||||||||||||||||||
Sbjct: 6 cttgctggagaagcagggcacgtgc 30
>RF00647;MIR164;AARH01005550.1/339945-339862 3694:Populus
trichocarpa
Length = 84
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 29 cttgctggagaagcagggcacgtgc 53
|||||||||||||||||||||||||
Sbjct: 6 cttgctggagaagcagggcacgtgc 30
>RF00647;MIR164;AASG02000861.1/36470-36555 3988:Ricinus communis
(castor bean)
Length = 86
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 29 cttgctggagaagcagggcacgtgc 53
|||||||||||||||||||||||||
Sbjct: 6 cttgctggagaagcagggcacgtgc 30
>RF00647;MIR164;AP009712.1/25839-25750 34305:Lotus japonicus
Length = 90
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 32 gctggagaagcagggcacgtgcttgacc 59
|||||||||||||||||| |||||||||
Sbjct: 9 gctggagaagcagggcacatgcttgacc 36
>RF00647;MIR164;AASG02000423.1/48609-48498 3988:Ricinus communis
(castor bean)
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 tgctggagaagcagggcacgtgc 53
|||||||||||||||||||||||
Sbjct: 8 tgctggagaagcagggcacgtgc 30
>RF00647;MIR164;FM162584.1/200-286 3451:Aquilegia vulgaris
Length = 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 tgctggagaagcagggcacgtgc 53
|||||||||||||||||||||||
Sbjct: 8 tgctggagaagcagggcacgtgc 30
>RF00647;MIR164;FM162588.1/798-884 310672:Cabomba aquatica
Length = 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 tgctggagaagcagggcacgtgc 53
|||||||||||||||||||||||
Sbjct: 8 tgctggagaagcagggcacgtgc 30
>RF00647;MIR164;AY871042.1/1-85 3694:Populus trichocarpa
Length = 85
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 gctggagaagcagggcacgtgc 53
||||||||||||||||||||||
Sbjct: 1 gctggagaagcagggcacgtgc 22
>RF00647;MIR164;AY728400.1/2-73 3694:Populus trichocarpa
Length = 72
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 gctggagaagcagggcacgtgc 53
||||||||||||||||||||||
Sbjct: 1 gctggagaagcagggcacgtgc 22
>RF00647;MIR164;DQ090016.1/221-315 13451:Corylus avellana
Length = 95
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 28 ccttgctggagaagcagggcacgtgc 53
||||| ||||||||||||||||||||
Sbjct: 5 ccttgttggagaagcagggcacgtgc 30
>RF00647;MIR164;CAAP02000002.1/260390-260272 29760:Vitis vinifera
Length = 119
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 28 ccttgctggagaagcagggcacgtgc 53
||||| ||||||||||||||||||||
Sbjct: 5 ccttgttggagaagcagggcacgtgc 30
>RF00647;MIR164;CAAP02000007.1/54906-54816 29760:Vitis vinifera
Length = 91
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 25 aaaccttgctggagaagcagggcacgtgct 54
||||| ||||||||||||||||||| ||||
Sbjct: 2 aaaccatgctggagaagcagggcacatgct 31
>RF00647;MIR164;ABXC01001632.1/56279-56101 4558:Sorghum bicolor
(sorghum)
Length = 179
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 gctggagaagcagggcacgtgc 53
||||||||||||||||||||||
Sbjct: 9 gctggagaagcagggcacgtgc 30
