miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AK252042.1/8-95 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 88

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 83  tttcggaccaggcttcattccccatgac 110
           ||||||||||||||||||||||||||||
Sbjct: 61  tttcggaccaggcttcattccccatgac 88



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 12 gtcgaggggaatgacgccgggtctgaaaga 41
          ||||||||||||||||||||||| ||||||
Sbjct: 1  gtcgaggggaatgacgccgggtccgaaaga 30




>RF00075;mir-166;ABXC01000087.1/360026-360107 4558:Sorghum bicolor
           (sorghum)
          Length = 82

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 84  ttcggaccaggcttcattccccatgac 110
           |||||||||||||||||||||||||||
Sbjct: 56  ttcggaccaggcttcattccccatgac 82




>RF00075;mir-166;AC096855.5/123486-123562 39947:Oryza sativa
           Japonica Group
          Length = 77

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 84  ttcggaccaggcttcattccccatgac 110
           |||||||||||||||||||||||||||
Sbjct: 51  ttcggaccaggcttcattccccatgac 77




>RF00075;mir-166;ABIM01012128.1/12128-12036 3649:Carica papaya
           (papaya)
          Length = 93

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 83  tttcggaccaggcttcattcccc 105
           |||||||||||||||||||||||
Sbjct: 66  tttcggaccaggcttcattcccc 88




>RF00075;mir-166;AARH01001058.1/130278-130374 3694:Populus
           trichocarpa
          Length = 97

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 83  tttcggaccaggcttcattcccc 105
           |||||||||||||||||||||||
Sbjct: 70  tttcggaccaggcttcattcccc 92




>RF00075;mir-166;AASG02007713.1/11405-11313 3988:Ricinus communis
           (castor bean)
          Length = 93

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 83  tttcggaccaggcttcattcccc 105
           |||||||||||||||||||||||
Sbjct: 66  tttcggaccaggcttcattcccc 88




>RF00075;mir-166;BABK01039514.1/607-703 34305:Lotus japonicus
          Length = 97

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 83  tttcggaccaggcttcattcccc 105
           |||||||||||||||||||||||
Sbjct: 70  tttcggaccaggcttcattcccc 92




>RF00075;mir-166;CAAP02000553.1/130979-130890 29760:Vitis vinifera
          Length = 90

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 83  tttcggaccaggcttcattcccc 105
           |||||||||||||||||||||||
Sbjct: 63  tttcggaccaggcttcattcccc 85




>RF00075;mir-166;ABXC01000715.1/152379-152276 4558:Sorghum bicolor
           (sorghum)
          Length = 104

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 83  tttcggaccaggcttcattcccc 105
           |||||||||||||||||||||||
Sbjct: 77  tttcggaccaggcttcattcccc 99




>RF00075;mir-166;AAAA02007901.1/15784-15895 39946:Oryza sativa
           Indica Group
          Length = 112

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 83  tttcggaccaggcttcattcccc 105
           |||||||||||||||||||||||
Sbjct: 85  tttcggaccaggcttcattcccc 107




>RF00075;mir-166;ABEU01015165.1/9230-9152 145481:Physcomitrella
           patens subsp. patens
          Length = 79

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 83  tttcggaccaggcttcattcccc 105
           |||||||||||||||||||||||
Sbjct: 52  tttcggaccaggcttcattcccc 74




>RF00075;mir-166;ABEU01003209.1/178750-178656 145481:Physcomitrella
           patens subsp. patens
          Length = 95

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 83  tttcggaccaggcttcattcccc 105
           |||||||||||||||||||||||
Sbjct: 68  tttcggaccaggcttcattcccc 90




>RF00075;mir-166;ABIM01027778.1/12902-13001 3649:Carica papaya
           (papaya)
          Length = 100

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 84  ttcggaccaggcttcattcccc 105
           ||||||||||||||||||||||
Sbjct: 74  ttcggaccaggcttcattcccc 95




>RF00075;mir-166;EU548832.1/235-380 3702:Arabidopsis thaliana (thale
           cress)
          Length = 146

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 84  ttcggaccaggcttcattcccc 105
           ||||||||||||||||||||||
Sbjct: 120 ttcggaccaggcttcattcccc 141




>RF00075;mir-166;AC216447.1/33512-33607 3694:Populus trichocarpa
          Length = 96

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 84  ttcggaccaggcttcattcccc 105
           ||||||||||||||||||||||
Sbjct: 70  ttcggaccaggcttcattcccc 91




>RF00075;mir-166;AC140029.19/70272-70377 3880:Medicago truncatula
           (barrel medic)
          Length = 106

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 84  ttcggaccaggcttcattcccc 105
           ||||||||||||||||||||||
Sbjct: 80  ttcggaccaggcttcattcccc 101




>RF00075;mir-166;CU302248.6/62232-62044 3880:Medicago truncatula
           (barrel medic)
          Length = 189

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 84  ttcggaccaggcttcattcccc 105
           ||||||||||||||||||||||
Sbjct: 163 ttcggaccaggcttcattcccc 184




>RF00075;mir-166;BABK01014008.1/1570-1448 34305:Lotus japonicus
          Length = 123

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 84  ttcggaccaggcttcattcccc 105
           ||||||||||||||||||||||
Sbjct: 97  ttcggaccaggcttcattcccc 118




>RF00075;mir-166;CAAP02001545.1/66166-66077 29760:Vitis vinifera
          Length = 90

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 84  ttcggaccaggcttcattcccc 105
           ||||||||||||||||||||||
Sbjct: 64  ttcggaccaggcttcattcccc 85




>RF00075;mir-166;ABEU01002487.1/1609-1703 145481:Physcomitrella
           patens subsp. patens
          Length = 95

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 84  ttcggaccaggcttcattcccc 105
           ||||||||||||||||||||||
Sbjct: 69  ttcggaccaggcttcattcccc 90




>RF00075;mir-166;ABEU01002053.1/8010-8104 145481:Physcomitrella
           patens subsp. patens
          Length = 95

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 84  ttcggaccaggcttcattcccc 105
           ||||||||||||||||||||||
Sbjct: 69  ttcggaccaggcttcattcccc 90




>RF00075;mir-166;ABEU01001509.1/36651-36730 145481:Physcomitrella
           patens subsp. patens
          Length = 80

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 84  ttcggaccaggcttcattcccc 105
           ||||||||||||||||||||||
Sbjct: 54  ttcggaccaggcttcattcccc 75




>RF00075;mir-166;ABEU01008046.1/36531-36607 145481:Physcomitrella
           patens subsp. patens
          Length = 77

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 84  ttcggaccaggcttcattcccc 105
           ||||||||||||||||||||||
Sbjct: 51  ttcggaccaggcttcattcccc 72




>RF00075;mir-166;ABEU01002839.1/114707-114612 145481:Physcomitrella
           patens subsp. patens
          Length = 96

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 84  ttcggaccaggcttcattcccc 105
           ||||||||||||||||||||||
Sbjct: 70  ttcggaccaggcttcattcccc 91




>RF00075;mir-166;ABEU01001509.1/36829-36913 145481:Physcomitrella
           patens subsp. patens
          Length = 85

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 84  ttcggaccaggcttcattcccc 105
           ||||||||||||||||||||||
Sbjct: 59  ttcggaccaggcttcattcccc 80