miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AC092076.7/52843-52692 39947:Oryza sativa Japonica
Group
Length = 152
Score = 93.7 bits (47), Expect = 8e-19
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 118 tcttgaggtcatgccttgctaggtcatgctgcggcagcctcacttcttccc 168
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 tcttgtggtcatgccttgctaggtcatgctgcggcagcctcacttcttccc 149
Score = 69.9 bits (35), Expect = 1e-11
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 22 agggaacgagtgaagctgccagcatgatctagctc 56
|||||||||||||||||||||||||||||||||||
Sbjct: 4 agggaacgagtgaagctgccagcatgatctagctc 38
>RF00640;MIR167_1;ABXC01000050.1/9782-9902 4558:Sorghum bicolor
(sorghum)
Length = 121
Score = 79.8 bits (40), Expect = 1e-14
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 130 gccttgctaggtcatgctgcggcagcctcacttcttcccg 169
||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 gccttgctaggtcatgctgcggcagcctcacttcttcccg 119
Score = 73.8 bits (37), Expect = 8e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 22 agggaacgagtgaagctgccagcatgatctagctcagcgtgatca 66
||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 4 agggaacgagtgaagctgccagcatgatctagctctgagtgatca 48
>RF00640;MIR167_1;EU947925.1/384-504 4577:Zea mays
Length = 121
Score = 75.8 bits (38), Expect = 2e-13
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 124 ggtcatgccttgctaggtcatgctgcggcagcctcacttcttcccg 169
|||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 74 ggtcatgccttgctagatcatgctgtggcagcctcacttcttcccg 119
Score = 73.8 bits (37), Expect = 8e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 22 agggaacgagtgaagctgccagcatgatctagctcagcgtgatca 66
||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 4 agggaacgagtgaagctgccagcatgatctagctcggagtgatca 48
>RF00640;MIR167_1;EU084500.1/298-436 260130:Acca sellowiana
Length = 139
Score = 61.9 bits (31), Expect = 3e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 22 agggaacgagtgaagctgccagcatgatcta 52
|||||||||||||||||||||||||||||||
Sbjct: 4 agggaacgagtgaagctgccagcatgatcta 34
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 135 gctaggtcatgctgcggcagcctcacttcttccc 168
|||||||||||||||| |||||||||||||||||
Sbjct: 103 gctaggtcatgctgcgacagcctcacttcttccc 136
>RF00640;MIR167_1;AL928781.4/79791-79930 4530:Oryza sativa (rice)
Length = 140
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 29 gagtgaagctgccagcatgatctagctc 56
||||||||||||||||||||||||||||
Sbjct: 11 gagtgaagctgccagcatgatctagctc 38
>RF00640;MIR167_1;EU548982.1/151-266 3702:Arabidopsis thaliana
(thale cress)
Length = 116
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 22 agggaacgagtgaagctgccagcatgatcta 52
||||||| |||||||||||||||||||||||
Sbjct: 4 agggaacaagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;ABXC01005647.1/66563-66713 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 29 gagtgaagctgccagcatgatctagct 55
|||||||||||||||||||||||||||
Sbjct: 11 gagtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;ABIM01012099.1/4885-4992 3649:Carica papaya
(papaya)
Length = 108
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 30 agtgaagctgccagcatgatctagct 55
||||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AP006429.1/12775-12654 34305:Lotus japonicus
Length = 122
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 30 agtgaagctgccagcatgatctagct 55
||||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctagct 37
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 136 ctaggtcatgctgcggcagcctcacttcttcc 167
||||||||||||||| |||||||||| |||||
Sbjct: 87 ctaggtcatgctgcgacagcctcactccttcc 118
>RF00640;MIR167_1;CAAP02000379.1/19428-19545 29760:Vitis vinifera
Length = 118
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 30 agtgaagctgccagcatgatctagct 55
||||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AASG02000565.1/57130-57272 3988:Ricinus communis
(castor bean)
Length = 143
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 31 gtgaagctgccagcatgatctagct 55
|||||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 24 ggaacgagtgaagctgccagcatgatcta 52
||||| |||||||||||||||||||||||
Sbjct: 6 ggaacaagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AC174291.12/5719-6052 3880:Medicago truncatula
(barrel medic)
Length = 334
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 30 agtgaagctgccagcatgatctag 53
||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctag 35
>RF00640;MIR167_1;ABXC01000087.1/205849-206071 4558:Sorghum
bicolor (sorghum)
Length = 223
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 gagtgaagctgccagcatgatcta 52
||||||||||||||||||||||||
Sbjct: 11 gagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AARH01001059.1/160212-160110 3694:Populus
trichocarpa
Length = 103
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 agtgaagctgccagcatgatcta 52
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AC189327.2/282-159 51351:Brassica rapa subsp.
pekinensis
Length = 124
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgaagctgccagcatgatctag 53
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctag 35
>RF00640;MIR167_1;AARH01033933.1/298-187 3694:Populus trichocarpa
Length = 112
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 gtgaagctgccagcatgatcta 52
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AAAA02011018.1/78132-77981 39946:Oryza sativa
Indica Group
Length = 152
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 gtgaagctgccagcatgatcta 52
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
