miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AM476671.2/16778-16661 29760:Vitis vinifera
Length = 118
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 8 agagtggaatgtagccaaggatgacttgc 36
|||||||||||||||||||||||||||||
Sbjct: 1 agagtggaatgtagccaaggatgacttgc 29
>RF00645;MIR169_2;ABXC01006862.1/83418-83293 4558:Sorghum bicolor
(sorghum)
Length = 126
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 14 gaatgtagccaaggatgacttgccgggtatgtgcatg 50
||||| |||||||||||||||||||| ||||||||||
Sbjct: 7 gaatgcagccaaggatgacttgccggatatgtgcatg 43
>RF00645;MIR169_2;AARH01007603.1/209255-209144 3694:Populus
trichocarpa
Length = 112
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 agagtggaatgtagccaaggatgacttgccgg 39
||||| ||||| ||||||||||||||||||||
Sbjct: 1 agagtagaatgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AARH01002993.1/21348-21232 3694:Populus
trichocarpa
Length = 117
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 agagtggaatgtagccaaggatgacttgccgg 39
||||| ||||| ||||||||||||||||||||
Sbjct: 1 agagtcgaatgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;CAAP02002239.1/50886-50767 29760:Vitis vinifera
Length = 120
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 agagtggaatgtagccaaggatgacttgccgg 39
|||||||| || ||||||||||||||||||||
Sbjct: 1 agagtggagtgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;CAAP02002239.1/44264-44145 29760:Vitis vinifera
Length = 120
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 agagtggaatgtagccaaggatgacttgccgg 39
|||||||| || ||||||||||||||||||||
Sbjct: 1 agagtggagtgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;ABXC01002876.1/68453-68594 4558:Sorghum bicolor
(sorghum)
Length = 142
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 atgtagccaaggatgacttgccgg 39
||||||||||||||||||||||||
Sbjct: 9 atgtagccaaggatgacttgccgg 32
>RF00645;MIR169_2;ABIM01024501.1/10588-10497 3649:Carica papaya
(papaya)
Length = 92
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgtagccaaggatgacttgccgg 39
|||||||||||||||||||||||
Sbjct: 10 tgtagccaaggatgacttgccgg 32
>RF00645;MIR169_2;CAAP02000151.1/80017-79930 29760:Vitis vinifera
Length = 88
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 gagtggaatgtagccaaggatgacttgccgg 39
|||| ||||| ||||||||||||||||||||
Sbjct: 2 gagtagaatgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;CAAP02000146.1/54492-54392 29760:Vitis vinifera
Length = 101
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 gagtggaatgtagccaaggatgacttgccgg 39
||||||||| ||||||||||||||||||||
Sbjct: 2 gagtggaatagagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AAAA02007387.1/24033-23898 39946:Oryza sativa
Indica Group
Length = 136
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgtagccaaggatgacttgccgg 39
|||||||||||||||||||||||
Sbjct: 10 tgtagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AP005769.3/167010-166879 39947:Oryza sativa
Japonica Group
Length = 132
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 ggaatgtagccaaggatgacttgccgg 39
|||||| ||||||||||||||||||||
Sbjct: 6 ggaatgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AP008208.1/31224491-31224356 39947:Oryza sativa
Japonica Group
Length = 136
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgtagccaaggatgacttgccgg 39
|||||||||||||||||||||||
Sbjct: 10 tgtagccaaggatgacttgccgg 32
>RF00865;MIR169_5;ABXC01001391.1/122449-122522 4558:Sorghum
bicolor (sorghum)
Length = 74
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 18 gtagccaaggatgacttgccgg 39
||||||||||||||||||||||
Sbjct: 55 gtagccaaggatgacttgccgg 34
>RF00645;MIR169_2;AL161555.2/100990-100886 3702:Arabidopsis
thaliana (thale cress)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 agccaaggatgacttgccgggt 41
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccgggt 34
>RF00645;MIR169_2;AC157504.2/38883-38997 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 10 agtggaatgtagccaaggatgacttgccgg 39
|||| |||| ||||||||||||||||||||
Sbjct: 3 agtgaaatggagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AC135313.13/45543-45452 3880:Medicago truncatula
(barrel medic)
Length = 92
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 10 agtggaatgtagccaaggatgacttgccgg 39
|||||| || ||||||||||||||||||||
Sbjct: 3 agtggagtgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;BABK01035994.1/667-569 34305:Lotus japonicus
Length = 99
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 10 agtggaatgtagccaaggatgacttgccgg 39
|||| |||| ||||||||||||||||||||
Sbjct: 3 agtgaaatgaagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AM489765.1/426-571 4102:Petunia x hybrida
Length = 146
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 10 agtggaatgtagccaaggatgacttgccgg 39
|||| |||| ||||||||||||||||||||
Sbjct: 6 agtgaaatgcagccaaggatgacttgccgg 35
>RF00645;MIR169_2;AM444055.2/7771-7675 29760:Vitis vinifera
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 10 agtggaatgtagccaaggatgacttgccgg 39
|||||| || ||||||||||||||||||||
Sbjct: 3 agtggattgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;ABXC01001391.1/122512-122383 4558:Sorghum
bicolor (sorghum)
Length = 130
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 gtagccaaggatgacttgccgg 39
||||||||||||||||||||||
Sbjct: 10 gtagccaaggatgacttgccgg 31
