miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;AAAA02031014.1/17953-17766 39946:Oryza sativa
Indica Group
Length = 188
Score = 67.9 bits (34), Expect = 5e-11
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 125 tgtggttgcatgggtgggtcttcttggctagccagagcggctctcatcca 174
||||| |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 50 tgtggctgcatgggccggtcttcttggctagccagagtggctctcatcca 1
Score = 61.9 bits (31), Expect = 3e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 26 tttggtagccaagaatgacttgcctatgctt 56
|||||||||||||||||||||||||||||||
Sbjct: 170 tttggtagccaagaatgacttgcctatgctt 140
>RF00865;MIR169_5;EU941000.1/258-87 4577:Zea mays
Length = 172
Score = 63.9 bits (32), Expect = 7e-10
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 25 ttttggtagccaagaatgacttgcctatgcttgccctctg 64
|||||||||||||||||||||||||||||| ||||||||
Sbjct: 158 ttttggtagccaagaatgacttgcctatgcacgccctctg 119
Score = 44.1 bits (22), Expect = 7e-04
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 141 ggtcttcttggctagccagagcggctctcatcca 174
||||||||||||||||||||| ||||||| ||||
Sbjct: 33 ggtcttcttggctagccagag-ggctctcgtcca 1
>RF00865;MIR169_5;ABXC01003263.1/1171-1002 4558:Sorghum bicolor
(sorghum)
Length = 170
Score = 63.9 bits (32), Expect = 7e-10
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 25 ttttggtagccaagaatgacttgcctatgcttgccctctg 64
||||| |||||||||||||||||||||||| |||||||||
Sbjct: 155 ttttgctagccaagaatgacttgcctatgcatgccctctg 116
Score = 52.0 bits (26), Expect = 3e-06
Identities = 45/50 (90%), Gaps = 1/50 (2%)
Strand = Plus / Minus
Query: 125 tgtggttgcatgggtgggtcttcttggctagccagagcggctctcatcca 174
||||| |||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 49 tgtggctgcatgggcaggtcttcttggctagccagag-tgctctcatcca 1
>RF00645;MIR169_2;EU941000.1/95-252 4577:Zea mays
Length = 158
Score = 63.9 bits (32), Expect = 7e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 25 ttttggtagccaagaatgacttgcctatgcttgccctctg 64
|||||||||||||||||||||||||||||| ||||||||
Sbjct: 7 ttttggtagccaagaatgacttgcctatgcacgccctctg 46
>RF00865;MIR169_5;AC123517.2/63512-63700 39947:Oryza sativa Japonica
Group
Length = 189
Score = 58.0 bits (29), Expect = 5e-08
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 125 tgtggttgcatgggtgggtcttcttggctagccagagcggctctc 169
||||| |||||||| ||||||||||||||||||||| |||||||
Sbjct: 45 tgtggctgcatgggccggtcttcttggctagccagagtggctctc 1
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 26 tttggtagccaagaatgacttgcctatg 53
||||||||||||||||||||||||||||
Sbjct: 176 tttggtagccaagaatgacttgcctatg 149
>RF00865;MIR169_5;AC123517.2/59786-59972 39947:Oryza sativa Japonica
Group
Length = 187
Score = 58.0 bits (29), Expect = 5e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 131 tgcatgggtgggtcttcttggctagccagagcggctctcat 171
|||||||| ||||||||||||||||||||| |||||||||
Sbjct: 41 tgcatgggccggtcttcttggctagccagagtggctctcat 1
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 26 tttggtagccaagaatgacttgcctatgctt 56
|||||||||||||||||||||||||| ||||
Sbjct: 174 tttggtagccaagaatgacttgcctacgctt 144
>RF00865;MIR169_5;ABIM01014270.1/4571-4728 3649:Carica papaya
(papaya)
Length = 158
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 26 tttggtagccaagaatgacttgcct 50
|||||||||||||||||||||||||
Sbjct: 144 tttggtagccaagaatgacttgcct 120
>RF00865;MIR169_5;EU968670.1/235-103 4577:Zea mays
Length = 133
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 142 gtcttcttggctagccagagcggctctcatcca 174
|||| ||||||||||| ||||||||||||||||
Sbjct: 33 gtctccttggctagcccgagcggctctcatcca 1
>RF00645;MIR169_2;ABIM01014270.1/4721-4577 3649:Carica papaya
(papaya)
Length = 145
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 26 tttggtagccaagaatgacttgcct 50
|||||||||||||||||||||||||
Sbjct: 8 tttggtagccaagaatgacttgcct 32
>RF00865;MIR169_5;AY551246.1/188-45 4530:Oryza sativa (rice)
Length = 144
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 142 gtcttcttggctagccagagcggctctcatcc 173
|||| ||||||||||| |||||||||||||||
Sbjct: 33 gtctccttggctagcctgagcggctctcatcc 2
>RF00645;MIR169_2;AASG02003632.1/1429-1542 3988:Ricinus communis
(castor bean)
Length = 114
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 26 tttggtagccaagaatgacttgcc 49
||||||||||||||||||||||||
Sbjct: 8 tttggtagccaagaatgacttgcc 31
>RF00865;MIR169_5;AARH01006471.1/67165-67023 3694:Populus
trichocarpa
Length = 143
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 26 tttggtagccaagaatgacttgcctat 52
||||||||||||| |||||||||||||
Sbjct: 126 tttggtagccaaggatgacttgcctat 100
>RF00645;MIR169_2;AARH01006471.1/67030-67159 3694:Populus
trichocarpa
Length = 130
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 26 tttggtagccaagaatgacttgcctat 52
||||||||||||| |||||||||||||
Sbjct: 11 tttggtagccaaggatgacttgcctat 37
>RF00865;MIR169_5;ABIM01001939.1/16104-16248 3649:Carica papaya
(papaya)
Length = 145
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 26 tttggtagccaagaatgacttgccta 51
||||||||||||| ||||||||||||
Sbjct: 129 tttggtagccaaggatgacttgccta 104
>RF00865;MIR169_5;ABXC01004203.1/1754-1629 4558:Sorghum bicolor
(sorghum)
Length = 126
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 26 tttggtagccaagaatgacttgccta 51
||||||||||||| ||||||||||||
Sbjct: 111 tttggtagccaaggatgacttgccta 86
>RF00865;MIR169_5;ABXC01004204.1/1140-1015 4558:Sorghum bicolor
(sorghum)
Length = 126
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 26 tttggtagccaagaatgacttgccta 51
||||||||||||| ||||||||||||
Sbjct: 111 tttggtagccaaggatgacttgccta 86
>RF00645;MIR169_2;ABIM01001939.1/16240-16110 3649:Carica papaya
(papaya)
Length = 131
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 26 tttggtagccaagaatgacttgccta 51
||||||||||||| ||||||||||||
Sbjct: 9 tttggtagccaaggatgacttgccta 34
>RF00645;MIR169_2;ABXC01004203.1/1636-1748 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 26 tttggtagccaagaatgacttgccta 51
||||||||||||| ||||||||||||
Sbjct: 9 tttggtagccaaggatgacttgccta 34
>RF00645;MIR169_2;ABXC01004204.1/1022-1134 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 26 tttggtagccaagaatgacttgccta 51
||||||||||||| ||||||||||||
Sbjct: 9 tttggtagccaaggatgacttgccta 34
