miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST 


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AP003573.3/25796-25895 39947:Oryza sativa
          Japonica Group
          Length = 100

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 50 tgattgagccgcgccaatatctct 73
          ||||||||||||||||||||||||
Sbjct: 68 tgattgagccgcgccaatatctct 91





>RF00643;MIR171_1;AC189627.2/36180-36072 51351:Brassica rapa
          subsp. pekinensis
          Length = 109

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 50 tgattgagccgcgccaatatctc 72
          |||||||||||||||||||||||
Sbjct: 77 tgattgagccgcgccaatatctc 99





>RF00643;MIR171_1;EU549097.1/220-333 3702:Arabidopsis thaliana
           (thale cress)
          Length = 114

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 50  tgattgagccgcgccaatatctc 72
           |||||||||||||||||||||||
Sbjct: 82  tgattgagccgcgccaatatctc 104