miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;AP003298.3/17210-16973 39947:Oryza sativa Japonica
Group
Length = 238
Score = 65.9 bits (33), Expect = 3e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 196 tatgtgtgggaatcttgatgatgctgcatcgga 228
|||||||||||||||||||||||||||||||||
Sbjct: 200 tatgtgtgggaatcttgatgatgctgcatcgga 232
Score = 54.0 bits (27), Expect = 1e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 19 gtgatttctgctgtggcatcatcaagattcacaca 53
|||||||||| |||||||||||||||||||||||
Sbjct: 1 gtgatttctgacgtggcatcatcaagattcacaca 35
>RF00452;mir-172;AC165172.2/39243-39397 4577:Zea mays
Length = 155
Score = 60.0 bits (30), Expect = 2e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 196 tatgtgtgggaatcttgatgatgctgcatcggacatca 233
||||||||||||||||||||||||||||| ||| ||||
Sbjct: 117 tatgtgtgggaatcttgatgatgctgcattggatatca 154
Score = 54.0 bits (27), Expect = 1e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 19 gtgatttctgctgtggcatcatcaagattcacaca 53
|||||||||| |||||||||||||||||||||||
Sbjct: 1 gtgatttctggagtggcatcatcaagattcacaca 35
>RF00452;mir-172;EU974220.1/371-523 4577:Zea mays
Length = 153
Score = 60.0 bits (30), Expect = 2e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 196 tatgtgtgggaatcttgatgatgctgcatcggacatca 233
||||||||||||||||||||||||||||| ||| ||||
Sbjct: 115 tatgtgtgggaatcttgatgatgctgcattggatatca 152
Score = 54.0 bits (27), Expect = 1e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 19 gtgatttctgctgtggcatcatcaagattcacaca 53
|||||||||| |||||||||||||||||||||||
Sbjct: 1 gtgatttctggagtggcatcatcaagattcacaca 35
>RF00452;mir-172;ABXC01002369.1/66790-66601 4558:Sorghum bicolor
(sorghum)
Length = 190
Score = 60.0 bits (30), Expect = 2e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 196 tatgtgtgggaatcttgatgatgctgcatcggacatca 233
||||||||||||||||||||||||||||| ||| ||||
Sbjct: 152 tatgtgtgggaatcttgatgatgctgcattggagatca 189
Score = 54.0 bits (27), Expect = 1e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 19 gtgatttctgctgtggcatcatcaagattcacaca 53
|||||||||| |||||||||||||||||||||||
Sbjct: 1 gtgatttctggcgtggcatcatcaagattcacaca 35
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana
(thale cress)
Length = 116
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 26 ctgctgtggcatcatcaagattcaca 51
||||||||||||||||||||||||||
Sbjct: 8 ctgctgtggcatcatcaagattcaca 33
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 205 gaatcttgatgatgctgcatcgg 227
|||||||||||||||||||||||
Sbjct: 87 gaatcttgatgatgctgcatcgg 109
>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
Length = 134
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 202 tgggaatcttgatgatgctgcatcgg 227
||||||||||||||||||||||||||
Sbjct: 102 tgggaatcttgatgatgctgcatcgg 127
>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
Length = 183
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 202 tgggaatcttgatgatgctgcatcgg 227
||||||||||||||||||||||||||
Sbjct: 151 tgggaatcttgatgatgctgcatcgg 176
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 201 gtgggaatcttgatgatgctgcatc 225
|||||||||||||||||||||||||
Sbjct: 92 gtgggaatcttgatgatgctgcatc 116
>RF00452;mir-172;ABIM01015449.1/13104-12974 3649:Carica papaya
(papaya)
Length = 131
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 202 tgggaatcttgatgatgctgcatc 225
||||||||||||||||||||||||
Sbjct: 99 tgggaatcttgatgatgctgcatc 122
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 202 tgggaatcttgatgatgctgcatc 225
||||||||||||||||||||||||
Sbjct: 65 tgggaatcttgatgatgctgcatc 88
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 200 tgtgggaatcttgatgatgctgca 223
||||||||||||||||||||||||
Sbjct: 106 tgtgggaatcttgatgatgctgca 129
>RF00452;mir-172;CAAP02002749.1/38930-38796 29760:Vitis vinifera
Length = 135
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 202 tgggaatcttgatgatgctgcatc 225
||||||||||||||||||||||||
Sbjct: 103 tgggaatcttgatgatgctgcatc 126
>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
(papaya)
Length = 173
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 205 gaatcttgatgatgctgcatcgg 227
|||||||||||||||||||||||
Sbjct: 144 gaatcttgatgatgctgcatcgg 166
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 205 gaatcttgatgatgctgcatcgg 227
|||||||||||||||||||||||
Sbjct: 112 gaatcttgatgatgctgcatcgg 134
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 205 gaatcttgatgatgctgcatcgg 227
|||||||||||||||||||||||
Sbjct: 133 gaatcttgatgatgctgcatcgg 155
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 205 gaatcttgatgatgctgcatcgg 227
|||||||||||||||||||||||
Sbjct: 83 gaatcttgatgatgctgcatcgg 105
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 205 gaatcttgatgatgctgcatcgg 227
|||||||||||||||||||||||
Sbjct: 92 gaatcttgatgatgctgcatcgg 114
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 205 gaatcttgatgatgctgcatcgg 227
|||||||||||||||||||||||
Sbjct: 91 gaatcttgatgatgctgcatcgg 113
>RF00452;mir-172;ABIM01030483.1/4658-4870 3649:Carica papaya
(papaya)
Length = 213
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 205 gaatcttgatgatgctgcatcg 226
||||||||||||||||||||||
Sbjct: 184 gaatcttgatgatgctgcatcg 205
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya (papaya)
Length = 201
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 202 tgggaatcttgatgatgctgca 223
||||||||||||||||||||||
Sbjct: 169 tgggaatcttgatgatgctgca 190
>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
trichocarpa
Length = 144
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 202 tgggaatcttgatgatgctgca 223
||||||||||||||||||||||
Sbjct: 112 tgggaatcttgatgatgctgca 133
>RF00452;mir-172;AY728437.1/1-132 3694:Populus trichocarpa
Length = 132
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 202 tgggaatcttgatgatgctgca 223
||||||||||||||||||||||
Sbjct: 106 tgggaatcttgatgatgctgca 127
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 202 tgggaatcttgatgatgctgca 223
||||||||||||||||||||||
Sbjct: 124 tgggaatcttgatgatgctgca 145
>RF00452;mir-172;ABXC01000976.1/316269-316174 4558:Sorghum bicolor
(sorghum)
Length = 96
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 198 tgtgtgggaatcttgatgatgctgca 223
|||||| |||||||||||||||||||
Sbjct: 60 tgtgtgtgaatcttgatgatgctgca 85
