miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AACV01002034.1/2269-2077 39947:Oryza sativa Japonica
Group
Length = 193
Score = 178 bits (90), Expect = 2e-44
Identities = 157/178 (88%), Gaps = 1/178 (0%)
Strand = Plus / Plus
Query: 7 aagagagctctcttcagtccactctcagatgactgtagggttttattagctgccgattca 66
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 9 aagagagctctcttcagtccactctcagatggctgtagggttttattagctgccgaatca 68
Query: 67 tccattcacctaccaagaatcatgagggcgtatatgtcttggtagccgactggatggcac 126
||||||||||||||||||| || || || ||| |||||||||| ||||||||| | |
Sbjct: 69 tccattcacctaccaagaaagttgcaggagtgtatctcttggtagcggactggatgacgc 128
Query: 127 gggagctacaa-aaagcttttcgttgtttgtggttggactgaagggtgctcccttgct 183
|||||||| || |||| | || |||||||||||||||||||||||||||||||||
Sbjct: 129 gggagctaaaatttagctctgcgccgtttgtggttggactgaagggtgctcccttgct 186
>RF00638;MIR159;ABXC01002190.1/69225-69027 4558:Sorghum bicolor
(sorghum)
Length = 199
Score = 113 bits (57), Expect = 9e-25
Identities = 152/181 (83%), Gaps = 7/181 (3%)
Strand = Plus / Plus
Query: 7 aagagagctctcttcagtccactctcagatgactgtagggttttattagctgccgattca 66
||||||||||||||||||||||||| | ||| |||||| |||| |||||||||||| |||
Sbjct: 9 aagagagctctcttcagtccactctaaaatggctgtagagtttcattagctgccgactca 68
Query: 67 tccattcacctaccaagaatcatg----aggg--cgtatatgtcttggtagccgactgga 120
||||||||||||||||||| |||| || | | | |||||||||||||| |||
Sbjct: 69 tccattcacctaccaagaaccatggacaagcgataggtttggtcttggtagccgagtggg 128
Query: 121 tggcacgggagctacaa-aaagcttttcgttgtttgtggttggactgaagggtgctccct 179
|||| ||||||||| || ||||| | || ||||| ||||||||||||||||||||||||
Sbjct: 129 tggcgcgggagctaaaatcaagctctacgctgtttatggttggactgaagggtgctccct 188
Query: 180 t 180
|
Sbjct: 189 t 189
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 taagagagctctcttcagtccactc 30
|||||||||||||||||||||||||
Sbjct: 8 taagagagctctcttcagtccactc 32
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 aagagagctctcttcagtccactc 30
||||||||||||||||||||||||
Sbjct: 9 aagagagctctcttcagtccactc 32
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 44.1 bits (22), Expect = 7e-04
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 6 taagagagctctcttcagtccactctcagatgactgtagggttttattagctgccgattc 65
|||||||||| |||||||||||||| | || | ||||| ||| |||||||||||| ||
Sbjct: 8 taagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactc 67
Query: 66 at 67
||
Sbjct: 68 at 69
