miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00688;MIR394;AACV01005112.1/32080-32191 39947:Oryza sativa
Japonica Group
Length = 112
Score = 73.8 bits (37), Expect = 8e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 123 cttggaggtgggcatactgccaatggagctgtgtagg 159
|||||||||||||||||||||||||||||||||||||
Sbjct: 76 cttggaggtgggcatactgccaatggagctgtgtagg 112
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 38 cttaccgagagctctttggcattctgtccacctccttg 75
||||| ||||| ||||||||||||||||||||||||||
Sbjct: 1 cttactgagagttctttggcattctgtccacctccttg 38
>RF00688;MIR394;ABXC01002939.1/43674-43574 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 71.9 bits (36), Expect = 3e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 124 ttggaggtgggcatactgccaatggagctgtgtagg 159
||||||||||||||||||||||||||||||||||||
Sbjct: 66 ttggaggtgggcatactgccaatggagctgtgtagg 101
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 ttggcattctgtccacctccttgc 76
||||||||||||||||||||||||
Sbjct: 16 ttggcattctgtccacctccttgc 39
>RF00688;MIR394;BT066604.1/356-467 4577:Zea mays
Length = 112
Score = 63.9 bits (32), Expect = 8e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 124 ttggaggtgggcatactgccaatggagctgtgtagg 159
|||||||||||||||||||||||||||||| |||||
Sbjct: 77 ttggaggtgggcatactgccaatggagctgcgtagg 112
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 38 cttaccgagagctctttggcattctgtccacctcc 72
||||| ||||| || ||||||||||||||||||||
Sbjct: 1 cttactgagagttccttggcattctgtccacctcc 35
>RF00688;MIR394;EU947221.1/92-210 4577:Zea mays
Length = 119
Score = 63.9 bits (32), Expect = 8e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 124 ttggaggtgggcatactgccaatggagctgtg 155
||||||||||||||||||||||||||||||||
Sbjct: 84 ttggaggtgggcatactgccaatggagctgtg 115
>RF00688;MIR394;ABXC01001499.1/165004-165103 4558:Sorghum bicolor
(sorghum)
Length = 100
Score = 63.9 bits (32), Expect = 8e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 124 ttggaggtgggcatactgccaatggagctgtgtagg 159
|||||||||| |||||||||||||||||||||||||
Sbjct: 65 ttggaggtggacatactgccaatggagctgtgtagg 100
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 44 gagagctctttggcattctgtccacctccttgc 76
||||| || ||||||||||||||||||||||||
Sbjct: 7 gagagttccttggcattctgtccacctccttgc 39
>RF00688;MIR394;AC189318.1/31773-31892 51351:Brassica rapa subsp.
pekinensis
Length = 120
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 45 agagctctttggcattctgtccacctcctt 74
|||| |||||||||||||||||||||||||
Sbjct: 6 agagttctttggcattctgtccacctcctt 35
>RF00688;MIR394;EU549378.1/213-333 3702:Arabidopsis thaliana
(thale cress)
Length = 121
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 tctttggcattctgtccacctcctt 74
|||||||||||||||||||||||||
Sbjct: 11 tctttggcattctgtccacctcctt 35
>RF00688;MIR394;AC009978.3/24986-25106 3702:Arabidopsis thaliana
(thale cress)
Length = 121
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 45 agagctctttggcattctgtccacctcct 73
|||| ||||||||||||||||||||||||
Sbjct: 6 agagatctttggcattctgtccacctcct 34
>RF00688;MIR394;EU549400.1/212-328 3702:Arabidopsis thaliana
(thale cress)
Length = 117
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 tctttggcattctgtccacctcctt 74
|||||||||||||||||||||||||
Sbjct: 11 tctttggcattctgtccacctcctt 35
>RF00688;MIR394;AC189295.2/85926-86037 51351:Brassica rapa subsp.
pekinensis
Length = 112
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 45 agagctctttggcattctgtccacctcc 72
|||| |||||||||||||||||||||||
Sbjct: 6 agagatctttggcattctgtccacctcc 33
>RF00688;MIR394;AASG02000377.1/56114-56246 3988:Ricinus communis
(castor bean)
Length = 133
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 ttggcattctgtccacctcctt 74
||||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcctt 35
