miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AP008210.1/32655890-32656029 39947:Oryza sativa
Japonica Group
Length = 140
Score = 69.9 bits (35), Expect = 9e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 13 ctggagttctcctcaaatcacttcagtagctagctagct 51
||||||||||||||||||||||||||||| |||||||||
Sbjct: 8 ctggagttctcctcaaatcacttcagtagatagctagct 46
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 114 agtgaagtgtttgggggaactctgggtggcaa 145
|||||||||||||||||||||| || ||||||
Sbjct: 109 agtgaagtgtttgggggaactccggttggcaa 140
>RF00451;mir-395;ABXC01004449.1/8869-8999 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 63.9 bits (32), Expect = 6e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 114 agtgaagtgtttgggggaactctgggtggcaa 145
||||||||||||||||||||||||||||||||
Sbjct: 100 agtgaagtgtttgggggaactctgggtggcaa 131
Score = 50.1 bits (25), Expect = 9e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 6 ttgtcacctggagttctcctcaaatcacttcagtagc 42
||||||||||||||||||| |||| |||||||||||
Sbjct: 1 ttgtcacctggagttctccacaaactacttcagtagc 37
>RF00451;mir-395;AARH01006980.1/2290-2177 3694:Populus trichocarpa
Length = 114
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 116 tgaagtgtttgggggaactctgggtggca 144
|||||||||||||||||||||||||||||
Sbjct: 85 tgaagtgtttgggggaactctgggtggca 113
>RF00451;mir-395;AP008214.1/3292800-3292911 39947:Oryza sativa
Japonica Group
Length = 112
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 114 agtgaagtgtttgggggaactctgggtggca 144
||||||||||||||||||||||| |||||||
Sbjct: 81 agtgaagtgtttgggggaactctaggtggca 111
>RF00451;mir-395;AACV01019418.1/13062-13204 39947:Oryza sativa
Japonica Group
Length = 143
Score = 54.0 bits (27), Expect = 6e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 13 ctggagttctcctcaaatcacttcagtagctagctagct 51
||||||||||||||||| |||||||| || |||||||||
Sbjct: 8 ctggagttctcctcaaaccacttcagcagatagctagct 46
>RF00451;mir-395;AP008214.1/3293135-3293246 39947:Oryza sativa
Japonica Group
Length = 112
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 115 gtgaagtgtttgggggaactctgggtggca 144
|||||||||||||||||||||| |||||||
Sbjct: 82 gtgaagtgtttgggggaactctaggtggca 111
>RF00451;mir-395;ABXC01004440.1/121806-121675 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 6 ttgtcacctggagttctcctcaaatcacttcagtag 41
||||||||||||||||||| |||| ||||||||||
Sbjct: 1 ttgtcacctggagttctccacaaactacttcagtag 36
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 114 agtgaagtgtttgggggaactctgggtggcaa 145
|||||||| |||||||||||||| ||||||||
Sbjct: 101 agtgaagtatttgggggaactctaggtggcaa 132
>RF00451;mir-395;ABXC01004559.1/90713-90831 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 114 agtgaagtgtttgggggaactctgggtg 141
||||||||||||||||||||||| ||||
Sbjct: 88 agtgaagtgtttgggggaactctaggtg 115
>RF00451;mir-395;AL606645.2/172825-172684 39947:Oryza sativa
Japonica Group
Length = 142
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 13 ctggagttctcctcaaatcacttcagtagctagcta 48
|||||||||||||||| ||||||||||| ||||||
Sbjct: 8 ctggagttctcctcaatccacttcagtagatagcta 43
>RF00451;mir-395;ABIM01022224.1/3975-3886 3649:Carica papaya
(papaya)
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 116 tgaagtgtttgggggaactctgg 138
|||||||||||||||||||||||
Sbjct: 61 tgaagtgtttgggggaactctgg 83
>RF00451;mir-395;ABIM01022223.1/1552-1464 3649:Carica papaya
(papaya)
Length = 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 116 tgaagtgtttgggggaactctgg 138
|||||||||||||||||||||||
Sbjct: 61 tgaagtgtttgggggaactctgg 83
>RF00451;mir-395;ABXC01004559.1/90896-91004 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 115 gtgaagtgtttgggggaactctgggtg 141
|||||||||||||||||||||| ||||
Sbjct: 79 gtgaagtgtttgggggaactctaggtg 105
>RF00451;mir-395;ABXC01004559.1/91212-91315 4558:Sorghum bicolor
(sorghum)
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 114 agtgaagtgtttgggggaactctgggtggca 144
||||||||||||||| ||||||| |||||||
Sbjct: 73 agtgaagtgtttgggtgaactctaggtggca 103
>RF00451;mir-395;ABXC01004449.1/9781-9883 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 115 gtgaagtgtttgggggaactctgggtg 141
|||||||||||||||||||||| ||||
Sbjct: 73 gtgaagtgtttgggggaactcttggtg 99
>RF00451;mir-395;ABXC01004440.1/121340-121256 4558:Sorghum bicolor
(sorghum)
Length = 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 115 gtgaagtgtttgggggaactctgggtg 141
|||||||||||||||||||||| ||||
Sbjct: 55 gtgaagtgtttgggggaactcttggtg 81
>RF00451;mir-395;AAAA02014891.1/20403-20488 39946:Oryza sativa
Indica Group
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 115 gtgaagtgtttgggggaactctgggtg 141
|||||||||||||||||||||| ||||
Sbjct: 56 gtgaagtgtttgggggaactctcggtg 82
>RF00451;mir-395;AP008214.1/3293470-3293581 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 115 gtgaagtgtttgggggaactctgggtg 141
|||||||||||||||||||||| ||||
Sbjct: 82 gtgaagtgtttgggggaactctcggtg 108
>RF00451;mir-395;AP004460.2/71210-71323 39947:Oryza sativa Japonica
Group
Length = 114
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 115 gtgaagtgtttgggggaactctgggtg 141
|||||||||||||||||||||| ||||
Sbjct: 84 gtgaagtgtttgggggaactcttggtg 110
>RF00451;mir-395;ABIM01010538.1/1971-1885 3649:Carica papaya
(papaya)
Length = 87
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 116 tgaagtgtttgggggaactctgggtg 141
|||||||||||||||||| |||||||
Sbjct: 58 tgaagtgtttgggggaacactgggtg 83
>RF00451;mir-395;ABIM01022224.1/4670-4748 3649:Carica papaya
(papaya)
Length = 79
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 116 tgaagtgtttgggggaactctgggtg 141
||||||||||||||||||||| ||||
Sbjct: 50 tgaagtgtttgggggaactcttggtg 75
>RF00451;mir-395;ABIM01010538.1/2937-3031 3649:Carica papaya
(papaya)
Length = 95
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 116 tgaagtgtttgggggaactctgggtg 141
|||||||||||||||||||| |||||
Sbjct: 66 tgaagtgtttgggggaactccgggtg 91
>RF00451;mir-395;AASG02008621.1/1369-1454 3988:Ricinus communis
(castor bean)
Length = 86
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 116 tgaagtgtttgggggaactctgggtg 141
||||||||||||||||||||| ||||
Sbjct: 57 tgaagtgtttgggggaactcttggtg 82
>RF00451;mir-395;AASG02002767.1/10540-10432 3988:Ricinus communis
(castor bean)
Length = 109
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 116 tgaagtgtttgggggaactctgggtg 141
||||||||||||||||||||| ||||
Sbjct: 80 tgaagtgtttgggggaactctaggtg 105
>RF00451;mir-395;ABXC01004440.1/120848-120746 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 116 tgaagtgtttgggggaactctgggtg 141
||||||||||||||||||||| ||||
Sbjct: 74 tgaagtgtttgggggaactcttggtg 99
>RF00451;mir-395;ABXC01004440.1/121011-120921 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 115 gtgaagtgtttgggggaactct 136
||||||||||||||||||||||
Sbjct: 61 gtgaagtgtttgggggaactct 82
>RF00451;mir-395;ABXC01004449.1/9463-9548 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 115 gtgaagtgtttgggggaactct 136
||||||||||||||||||||||
Sbjct: 56 gtgaagtgtttgggggaactct 77
>RF00451;mir-395;AF402959.1/7123-7037 4530:Oryza sativa (rice)
Length = 87
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 115 gtgaagtgtttgggggaactct 136
||||||||||||||||||||||
Sbjct: 57 gtgaagtgtttgggggaactct 78
>RF00451;mir-395;AP008210.1/31838919-31838832 39947:Oryza sativa
Japonica Group
Length = 88
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 115 gtgaagtgtttgggggaactct 136
||||||||||||||||||||||
Sbjct: 58 gtgaagtgtttgggggaactct 79
>RF00451;mir-395;AP008214.1/3292975-3293073 39947:Oryza sativa
Japonica Group
Length = 99
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 115 gtgaagtgtttgggggaactct 136
||||||||||||||||||||||
Sbjct: 69 gtgaagtgtttgggggaactct 90
>RF00451;mir-395;AACV01010557.1/49631-49718 39947:Oryza sativa
Japonica Group
Length = 88
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 115 gtgaagtgtttgggggaactct 136
||||||||||||||||||||||
Sbjct: 58 gtgaagtgtttgggggaactct 79
>RF00451;mir-395;AAAA02014816.1/37465-37552 39946:Oryza sativa
Indica Group
Length = 88
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 115 gtgaagtgtttgggggaactct 136
||||||||||||||||||||||
Sbjct: 58 gtgaagtgtttgggggaactct 79
>RF00451;mir-395;AAAA02014816.1/37188-37273 39946:Oryza sativa
Indica Group
Length = 86
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 115 gtgaagtgtttgggggaactct 136
||||||||||||||||||||||
Sbjct: 56 gtgaagtgtttgggggaactct 77
