miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AAAA02014891.1/20403-20488 39946:Oryza sativa
Indica Group
Length = 86
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 59 ttgtgaagtgtttgggggaactctcggtgtc 89
|||||||||||||||||||||||||||||||
Sbjct: 54 ttgtgaagtgtttgggggaactctcggtgtc 84
>RF00451;mir-395;ABXC01004440.1/121340-121256 4558:Sorghum bicolor
(sorghum)
Length = 85
Score = 60.0 bits (30), Expect = 5e-09
Identities = 70/82 (85%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 6 gtgtccccgggagttcccttcaaacactttacgaagcatctttctaagactatttgtgaa 65
|||||||| ||||||| || ||||||||| || ||||| |||| | ||| ||||||||
Sbjct: 1 gtgtccccaggagttctctgcaaacacttcacaaagca-cttttttagagcttttgtgaa 59
Query: 66 gtgtttgggggaactctcggtg 87
||||||||||||||||| ||||
Sbjct: 60 gtgtttgggggaactcttggtg 81
>RF00451;mir-395;AP008214.1/3293470-3293581 39947:Oryza sativa
Japonica Group
Length = 112
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 59 ttgtgaagtgtttgggggaactctcggtg 87
|||||||||||||||||||||||||||||
Sbjct: 80 ttgtgaagtgtttgggggaactctcggtg 108
>RF00451;mir-395;AF402959.1/7545-7457 4530:Oryza sativa (rice)
Length = 89
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 59 ttgtgaagtgtttgggggaactctcggtgtca 90
||||||||||||||| ||||||||||||||||
Sbjct: 57 ttgtgaagtgtttggaggaactctcggtgtca 88
>RF00451;mir-395;AAAA02014816.1/37465-37552 39946:Oryza sativa
Indica Group
Length = 88
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 60 tgtgaagtgtttgggggaactctcggtgtcac 91
||||||||||||||||||||||||||| ||||
Sbjct: 57 tgtgaagtgtttgggggaactctcggtatcac 88
>RF00451;mir-395;ABXC01004449.1/9310-9395 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 58 tttgtgaagtgtttgggggaactctcggtg 87
|||||||||||| |||||||||||||||||
Sbjct: 53 tttgtgaagtgtatgggggaactctcggtg 82
>RF00451;mir-395;ABXC01004440.1/121171-121082 4558:Sorghum bicolor
(sorghum)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 58 tttgtgaagtgtttgggggaactctcggtgtcac 91
||||||||||||||||||||||| | ||||||||
Sbjct: 57 tttgtgaagtgtttgggggaacttttggtgtcac 90
>RF00451;mir-395;ABXC01004449.1/9463-9548 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 58 tttgtgaagtgtttgggggaactctcggtgtcac 91
||||||||||||||||||||||||| |||||||
Sbjct: 53 tttgtgaagtgtttgggggaactcttagtgtcac 86
>RF00451;mir-395;AP004460.2/71210-71323 39947:Oryza sativa Japonica
Group
Length = 114
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 58 tttgtgaagtgtttgggggaactctcggtg 87
||||||||||||||||||||||||| ||||
Sbjct: 81 tttgtgaagtgtttgggggaactcttggtg 110
>RF00451;mir-395;ABIM01022224.1/4670-4748 3649:Carica papaya
(papaya)
Length = 79
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 62 tgaagtgtttgggggaactctcggtgtca 90
||||||||||||||||||||| |||||||
Sbjct: 50 tgaagtgtttgggggaactcttggtgtca 78
>RF00451;mir-395;AASG02008621.1/1369-1454 3988:Ricinus communis
(castor bean)
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 62 tgaagtgtttgggggaactctcggtgtca 90
||||||||||||||||||||| |||||||
Sbjct: 57 tgaagtgtttgggggaactcttggtgtca 85
>RF00451;mir-395;AM459231.2/3067-3154 29760:Vitis vinifera
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 62 tgaagtgtttgggggaactctcggtgtca 90
|||||||||||||||||||| ||||||||
Sbjct: 59 tgaagtgtttgggggaactcccggtgtca 87
>RF00451;mir-395;ABXC01004559.1/90896-91004 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 60 tgtgaagtgtttgggggaactctcggtgt 88
||||||||||||||||||||||| |||||
Sbjct: 78 tgtgaagtgtttgggggaactctaggtgt 106
>RF00451;mir-395;ABXC01004440.1/121011-120921 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tttgtgaagtgtttgggggaactct 82
|||||||||||||||||||||||||
Sbjct: 58 tttgtgaagtgtttgggggaactct 82
>RF00451;mir-395;AP008210.1/31838919-31838832 39947:Oryza sativa
Japonica Group
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 tgtgaagtgtttgggggaactctcg 84
|||||||||||||||||||||||||
Sbjct: 57 tgtgaagtgtttgggggaactctcg 81
>RF00451;mir-395;AACV01010557.1/49631-49718 39947:Oryza sativa
Japonica Group
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 tgtgaagtgtttgggggaactctcg 84
|||||||||||||||||||||||||
Sbjct: 57 tgtgaagtgtttgggggaactctcg 81
>RF00451;mir-395;ABXC01004449.1/9781-9883 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 60 tgtgaagtgtttgggggaactctcggtg 87
||||||||||||||||||||||| ||||
Sbjct: 72 tgtgaagtgtttgggggaactcttggtg 99
>RF00451;mir-395;ABXC01004559.1/90713-90831 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 61 gtgaagtgtttgggggaactctcggtgt 88
|||||||||||||||||||||| |||||
Sbjct: 89 gtgaagtgtttgggggaactctaggtgt 116
>RF00451;mir-395;AF402959.1/7123-7037 4530:Oryza sativa (rice)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 60 tgtgaagtgtttgggggaactctcggtgtcac 91
||||||||||||||||||||||| | ||||||
Sbjct: 56 tgtgaagtgtttgggggaactcttgatgtcac 87
>RF00451;mir-395;AP008214.1/3293135-3293246 39947:Oryza sativa
Japonica Group
Length = 112
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 60 tgtgaagtgtttgggggaactctcggtg 87
||||||||||||||||||||||| ||||
Sbjct: 81 tgtgaagtgtttgggggaactctaggtg 108
>RF00451;mir-395;AAAA02014816.1/37749-37836 39946:Oryza sativa
Indica Group
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 60 tgtgaagtgtttgggggaactctcggtgtcac 91
|||||||| |||||||||||||||| ||||||
Sbjct: 57 tgtgaagtatttgggggaactctcgatgtcac 88
>RF00451;mir-395;ABXC01004449.1/8869-8999 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 gtgaagtgtttgggggaactctcggtg 87
|||||||||||||||||||||| ||||
Sbjct: 101 gtgaagtgtttgggggaactctgggtg 127
>RF00451;mir-395;AP008214.1/3292975-3293073 39947:Oryza sativa
Japonica Group
Length = 99
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tgtgaagtgtttgggggaactct 82
|||||||||||||||||||||||
Sbjct: 68 tgtgaagtgtttgggggaactct 90
>RF00451;mir-395;AP008214.1/3292800-3292911 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 gtgaagtgtttgggggaactctcggtg 87
|||||||||||||||||||||| ||||
Sbjct: 82 gtgaagtgtttgggggaactctaggtg 108
>RF00451;mir-395;ABIM01010538.1/1971-1885 3649:Carica papaya
(papaya)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 tgaagtgtttgggggaactctcggtgtcac 91
|||||||||||||||||| || ||||||||
Sbjct: 58 tgaagtgtttgggggaacactgggtgtcac 87
>RF00451;mir-395;AARH01006980.1/2290-2177 3694:Populus trichocarpa
Length = 114
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 62 tgaagtgtttgggggaactctcggtg 87
||||||||||||||||||||| ||||
Sbjct: 85 tgaagtgtttgggggaactctgggtg 110
>RF00451;mir-395;AASG02002767.1/24567-24665 3988:Ricinus communis
(castor bean)
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 tgaagtgtttgggggaactctcggtgtcac 91
|||||||||||||||||||| ||||||||
Sbjct: 70 tgaagtgtttgggggaactcctggtgtcac 99
>RF00451;mir-395;AASG02002767.1/10540-10432 3988:Ricinus communis
(castor bean)
Length = 109
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 62 tgaagtgtttgggggaactctcggtg 87
||||||||||||||||||||| ||||
Sbjct: 80 tgaagtgtttgggggaactctaggtg 105
>RF00451;mir-395;ABXC01004440.1/120848-120746 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 62 tgaagtgtttgggggaactctcggtg 87
||||||||||||||||||||| ||||
Sbjct: 74 tgaagtgtttgggggaactcttggtg 99
>RF00451;mir-395;AAAA02014816.1/37188-37273 39946:Oryza sativa
Indica Group
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 gtgaagtgtttgggggaactct 82
||||||||||||||||||||||
Sbjct: 56 gtgaagtgtttgggggaactct 77
