miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;ABXC01004449.1/9463-9548 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 58.0 bits (29), Expect = 2e-08
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 11 gagttccctgcaagcacttcatgaggcccaattctgagggctactgtgaagtgtttgggg 70
|||||| |||||||||||||| ||||| || |||| ||| ||||||||||||||||
Sbjct: 11 gagttctctgcaagcacttcacgaggcatcgttttgagagcttttgtgaagtgtttgggg 70
Query: 71 gaactcttggtgt 83
|||||||| ||||
Sbjct: 71 gaactcttagtgt 83
>RF00451;mir-395;AP008214.1/3293135-3293246 39947:Oryza sativa
Japonica Group
Length = 112
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 50 gctactgtgaagtgtttgggggaactcttggtg 82
|||||||||||||||||||||||||||| ||||
Sbjct: 76 gctactgtgaagtgtttgggggaactctaggtg 108
>RF00451;mir-395;ABXC01004559.1/90896-91004 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 55 tgtgaagtgtttgggggaactcttggtgttac 86
||||||||||||||||||||||| ||||||||
Sbjct: 78 tgtgaagtgtttgggggaactctaggtgttac 109
>RF00451;mir-395;ABXC01004449.1/9781-9883 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 55 tgtgaagtgtttgggggaactcttggtg 82
||||||||||||||||||||||||||||
Sbjct: 72 tgtgaagtgtttgggggaactcttggtg 99
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 taccatgagttccctgcaagcacttca 31
||||||||||||||| |||||||||||
Sbjct: 5 taccatgagttcccttcaagcacttca 31
>RF00451;mir-395;ABXC01004440.1/121340-121256 4558:Sorghum bicolor
(sorghum)
Length = 85
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 55 tgtgaagtgtttgggggaactcttggtg 82
||||||||||||||||||||||||||||
Sbjct: 54 tgtgaagtgtttgggggaactcttggtg 81
>RF00451;mir-395;AP004460.2/71210-71323 39947:Oryza sativa Japonica
Group
Length = 114
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 55 tgtgaagtgtttgggggaactcttggtg 82
||||||||||||||||||||||||||||
Sbjct: 83 tgtgaagtgtttgggggaactcttggtg 110
>RF00451;mir-395;ABIM01022224.1/4670-4748 3649:Carica papaya
(papaya)
Length = 79
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcttggtgt 83
|||||||||||||||||||||||||||
Sbjct: 50 tgaagtgtttgggggaactcttggtgt 76
>RF00451;mir-395;AASG02008621.1/1369-1454 3988:Ricinus communis
(castor bean)
Length = 86
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcttggtgt 83
|||||||||||||||||||||||||||
Sbjct: 57 tgaagtgtttgggggaactcttggtgt 83
>RF00451;mir-395;ABXC01004440.1/121011-120921 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 55 tgtgaagtgtttgggggaactcttggt 81
|||||||||||||||||||||||||||
Sbjct: 60 tgtgaagtgtttgggggaactcttggt 86
>RF00451;mir-395;ABXC01004559.1/90713-90831 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 56 gtgaagtgtttgggggaactcttggtgttac 86
|||||||||||||||||||||| ||||||||
Sbjct: 89 gtgaagtgtttgggggaactctaggtgttac 119
>RF00451;mir-395;AP008214.1/3292975-3293073 39947:Oryza sativa
Japonica Group
Length = 99
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 55 tgtgaagtgtttgggggaactcttggt 81
|||||||||||||||||||||||||||
Sbjct: 68 tgtgaagtgtttgggggaactcttggt 94
>RF00451;mir-395;ABXC01004440.1/120848-120746 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcttggtg 82
||||||||||||||||||||||||||
Sbjct: 74 tgaagtgtttgggggaactcttggtg 99
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 5 taccatgagttccctgcaagcacttcatgaggc 37
||||| ||||||||| |||||||||||||||||
Sbjct: 5 taccacgagttcccttcaagcacttcatgaggc 37
>RF00451;mir-395;ABXC01004440.1/121171-121082 4558:Sorghum bicolor
(sorghum)
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 55 tgtgaagtgtttgggggaactcttggtgt 83
||||||||||||||||||||| |||||||
Sbjct: 59 tgtgaagtgtttgggggaacttttggtgt 87
>RF00451;mir-395;AF402959.1/7123-7037 4530:Oryza sativa (rice)
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 tgtgaagtgtttgggggaactcttg 79
|||||||||||||||||||||||||
Sbjct: 56 tgtgaagtgtttgggggaactcttg 80
>RF00451;mir-395;AAAA02014891.1/20403-20488 39946:Oryza sativa
Indica Group
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 55 tgtgaagtgtttgggggaactcttggtgt 83
||||||||||||||||||||||| |||||
Sbjct: 55 tgtgaagtgtttgggggaactctcggtgt 83
>RF00451;mir-395;AP008214.1/3293470-3293581 39947:Oryza sativa
Japonica Group
Length = 112
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 50 gctactgtgaagtgtttgggggaactcttggtg 82
|||| ||||||||||||||||||||||| ||||
Sbjct: 76 gctattgtgaagtgtttgggggaactctcggtg 108
>RF00451;mir-395;AC149601.3/8344-8225 3880:Medicago truncatula
(barrel medic)
Length = 120
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcttgg 80
||||||||||||||||||||||||
Sbjct: 91 tgaagtgtttgggggaactcttgg 114
>RF00451;mir-395;AC149601.3/18879-18765 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcttgg 80
||||||||||||||||||||||||
Sbjct: 86 tgaagtgtttgggggaactcttgg 109
>RF00451;mir-395;AC146854.19/12911-13031 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcttgg 80
||||||||||||||||||||||||
Sbjct: 92 tgaagtgtttgggggaactcttgg 115
>RF00451;mir-395;AC149601.3/13054-12939 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcttgg 80
||||||||||||||||||||||||
Sbjct: 87 tgaagtgtttgggggaactcttgg 110
>RF00451;mir-395;AC149601.3/39285-39203 3880:Medicago truncatula
(barrel medic)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcttgg 80
||||||||||||||||||||||||
Sbjct: 54 tgaagtgtttgggggaactcttgg 77
>RF00451;mir-395;AC146854.19/48268-48370 3880:Medicago truncatula
(barrel medic)
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcttgg 80
||||||||||||||||||||||||
Sbjct: 74 tgaagtgtttgggggaactcttgg 97
>RF00451;mir-395;AC149601.3/73603-73508 3880:Medicago truncatula
(barrel medic)
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcttgg 80
||||||||||||||||||||||||
Sbjct: 67 tgaagtgtttgggggaactcttgg 90
>RF00451;mir-395;AC194694.1/86216-86306 4081:Solanum lycopersicum
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcttgg 80
||||||||||||||||||||||||
Sbjct: 62 tgaagtgtttgggggaactcttgg 85
>RF00451;mir-395;AAAA02014816.1/37188-37273 39946:Oryza sativa
Indica Group
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 56 gtgaagtgtttgggggaactcttggtgt 83
||||||||||||||||||||||| ||||
Sbjct: 56 gtgaagtgtttgggggaactcttagtgt 83
>RF00451;mir-395;ABIM01022224.1/4874-4952 3649:Carica papaya
(papaya)
Length = 79
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcttg 79
|||||||||||||||||||||||
Sbjct: 50 tgaagtgtttgggggaactcttg 72
>RF00451;mir-395;EU549474.1/234-333 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcttggtgt 83
||||||||||||||| |||||||||||
Sbjct: 71 tgaagtgtttggggggactcttggtgt 97
>RF00451;mir-395;AARH01003032.1/301169-301270 3694:Populus
trichocarpa
Length = 102
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcttggtgt 83
|||||||||||||||||||| ||||||
Sbjct: 73 tgaagtgtttgggggaactcctggtgt 99
>RF00451;mir-395;AARH01006982.1/286-388 3694:Populus trichocarpa
Length = 103
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcttggtgt 83
|||||||||||||||||||| ||||||
Sbjct: 74 tgaagtgtttgggggaactcctggtgt 100
>RF00451;mir-395;AARH01003029.1/111607-111705 3694:Populus
trichocarpa
Length = 99
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcttggtgt 83
|||||||||||||||||||| ||||||
Sbjct: 70 tgaagtgtttgggggaactcctggtgt 96
>RF00451;mir-395;AASG02002767.1/24567-24665 3988:Ricinus communis
(castor bean)
Length = 99
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcttggtgt 83
|||||||||||||||||||| ||||||
Sbjct: 70 tgaagtgtttgggggaactcctggtgt 96
>RF00451;mir-395;AASG02002767.1/19144-19051 3988:Ricinus communis
(castor bean)
Length = 94
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcttggtgt 83
|||||||||||||||||||| ||||||
Sbjct: 65 tgaagtgtttgggggaactcctggtgt 91
>RF00451;mir-395;AM452429.2/43298-43211 29760:Vitis vinifera
Length = 88
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcttggtgt 83
|||||||||||||||||||| ||||||
Sbjct: 59 tgaagtgtttgggggaactcctggtgt 85
>RF00451;mir-395;AM429340.2/1581-1494 29760:Vitis vinifera
Length = 88
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcttggtgt 83
|||||||||||||||||||| ||||||
Sbjct: 59 tgaagtgtttgggggaactcctggtgt 85
>RF00451;mir-395;ABXC01004449.1/8869-8999 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 56 gtgaagtgtttgggggaactcttggtg 82
|||||||||||||||||||||| ||||
Sbjct: 101 gtgaagtgtttgggggaactctgggtg 127
>RF00451;mir-395;AP008210.1/31838919-31838832 39947:Oryza sativa
Japonica Group
Length = 88
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 tgtgaagtgtttgggggaactct 77
|||||||||||||||||||||||
Sbjct: 57 tgtgaagtgtttgggggaactct 79
>RF00451;mir-395;AACV01010557.1/49631-49718 39947:Oryza sativa
Japonica Group
Length = 88
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 tgtgaagtgtttgggggaactct 77
|||||||||||||||||||||||
Sbjct: 57 tgtgaagtgtttgggggaactct 79
>RF00451;mir-395;AP008214.1/3292800-3292911 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 56 gtgaagtgtttgggggaactcttggtg 82
|||||||||||||||||||||| ||||
Sbjct: 82 gtgaagtgtttgggggaactctaggtg 108
>RF00451;mir-395;AAAA02014816.1/37465-37552 39946:Oryza sativa
Indica Group
Length = 88
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 tgtgaagtgtttgggggaactct 77
|||||||||||||||||||||||
Sbjct: 57 tgtgaagtgtttgggggaactct 79
>RF00451;mir-395;AARH01006980.1/2290-2177 3694:Populus trichocarpa
Length = 114
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcttggtg 82
||||||||||||||||||||| ||||
Sbjct: 85 tgaagtgtttgggggaactctgggtg 110
>RF00451;mir-395;AASG02002767.1/10540-10432 3988:Ricinus communis
(castor bean)
Length = 109
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcttggtg 82
||||||||||||||||||||| ||||
Sbjct: 80 tgaagtgtttgggggaactctaggtg 105
>RF00451;mir-395;AC194694.1/82977-83070 4081:Solanum lycopersicum
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 aagtgtttgggggaactcttgg 80
||||||||||||||||||||||
Sbjct: 67 aagtgtttgggggaactcttgg 88
>RF00451;mir-395;AM473306.2/7052-6961 29760:Vitis vinifera
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcttggtg 82
|||||||||||||||||||| |||||
Sbjct: 63 tgaagtgtttgggggaactcctggtg 88
>RF00451;mir-395;CAAP02005254.1/14718-14811 29760:Vitis vinifera
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 tgaagtgtttgggggaactcttggtg 82
|||||||||||||||||||| |||||
Sbjct: 65 tgaagtgtttgggggaactcctggtg 90
