miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AP004043.3/15829-15652 39947:Oryza sativa Japonica
Group
Length = 178
Score = 81.8 bits (41), Expect = 4e-15
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 23 ggccatgctctccacaggctttcttgaactgtgaactcgtg 63
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggccatgctctccacaggctttcttgaactgtgaactcgtg 41
Score = 65.9 bits (33), Expect = 2e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 146 cttgttgatggttcaagaaagtccttggaaaacatgg 182
||||||||| |||||||||||||||||||||||||||
Sbjct: 139 cttgttgatagttcaagaaagtccttggaaaacatgg 175
>RF00648;MIR396;ABXC01003010.1/105635-105521 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 71.9 bits (36), Expect = 3e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 148 tgttgatggttcaagaaagtccttggaaaacatggc 183
||||||||||||||||||||||||||||||||||||
Sbjct: 78 tgttgatggttcaagaaagtccttggaaaacatggc 113
Score = 69.9 bits (35), Expect = 1e-11
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 23 ggccatgctctccacaggctttcttgaactgtgaactcg 61
||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 ggccatgttctccacaggctttcttgaactgtgaactcg 39
>RF00648;MIR396;EU950590.1/116-359 4577:Zea mays
Length = 244
Score = 67.9 bits (34), Expect = 5e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 26 catgctctccacaggctttcttgaactgtgaactcgtg 63
|||||| |||||||||||||||||||||||||||||||
Sbjct: 4 catgctttccacaggctttcttgaactgtgaactcgtg 41
Score = 44.1 bits (22), Expect = 8e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 148 tgttgatggttcaagaaagtccttggaaaacatg 181
||||||||||||||||||| || |||||| ||||
Sbjct: 207 tgttgatggttcaagaaagcccatggaaaccatg 240
>RF00648;MIR396;ABXC01004473.1/64146-64350 4558:Sorghum bicolor
(sorghum)
Length = 205
Score = 67.9 bits (34), Expect = 5e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 26 catgctctccacaggctttcttgaactgtgaactcgtg 63
|||||| |||||||||||||||||||||||||||||||
Sbjct: 4 catgctttccacaggctttcttgaactgtgaactcgtg 41
Score = 44.1 bits (22), Expect = 8e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 148 tgttgatggttcaagaaagtccttggaaaacatg 181
||||||||||||||||||| || |||||| ||||
Sbjct: 168 tgttgatggttcaagaaagcccatggaaaccatg 201
>RF00648;MIR396;AL732351.2/3841-4022 4530:Oryza sativa (rice)
Length = 182
Score = 67.9 bits (34), Expect = 5e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 26 catgctctccacaggctttcttgaactgtgaactcgtg 63
|||||| |||||||||||||||||||||||||||||||
Sbjct: 4 catgctttccacaggctttcttgaactgtgaactcgtg 41
Score = 44.1 bits (22), Expect = 8e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 148 tgttgatggttcaagaaagtccttggaaaacatg 181
||||||||||||||||||| || |||||| ||||
Sbjct: 145 tgttgatggttcaagaaagcccatggaaaccatg 178
>RF00648;MIR396;AC226038.1/95545-95657 4641:Musa acuminata
Length = 113
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 26 catgctctccacaggctttcttgaactgtgaact 59
|||| |||||||||||||||||||||||||||||
Sbjct: 4 catgttctccacaggctttcttgaactgtgaact 37
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 156 gttcaagaaagtccttggaaaacatg 181
||||||||||||||||||||||||||
Sbjct: 84 gttcaagaaagtccttggaaaacatg 109
