miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AAAA02018332.1/10514-10398 39946:Oryza sativa Indica
Group
Length = 117
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 87 ttgcacgagagggcagttcaataaagctgtgggaaatttcagaga 131
||||||||| | |||||||||||||||||||||||||| ||||||
Sbjct: 73 ttgcacgagtgtgcagttcaataaagctgtgggaaattacagaga 117
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 26 tgtgatcttccacagctttcttgaactgc 54
|||| ||||||||||||||||||||||||
Sbjct: 4 tgtggtcttccacagctttcttgaactgc 32
>RF00648;MIR396;AP005056.2/134150-134304 39947:Oryza sativa Japonica
Group
Length = 155
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 93 gagagggcagttcaataaagctgtgggaaatttcagaga 131
||||| |||||||||||||||||||||||||| ||||||
Sbjct: 117 gagagagcagttcaataaagctgtgggaaattgcagaga 155
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 26 tgtgatcttccacagctttcttgaactgc 54
|||||||||||||||||||||||||||||
Sbjct: 4 tgtgatcttccacagctttcttgaactgc 32
>RF00648;MIR396;CAAP02002594.1/43203-43097 29760:Vitis vinifera
Length = 107
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 24 tctgtgatcttccacagctttcttgaactg 53
||||||||||||||||||||||||||||||
Sbjct: 2 tctgtgatcttccacagctttcttgaactg 31
>RF00648;MIR396;ABXC01002982.1/44228-44122 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 60.0 bits (30), Expect = 9e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 98 ggcagttcaataaagctgtgggaaatttcagaga 131
||||||||||||||||||||||||||| ||||||
Sbjct: 74 ggcagttcaataaagctgtgggaaattgcagaga 107
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 tcttccacagctttcttgaactgc 54
||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgc 32
>RF00648;MIR396;ABXC01006376.1/116039-116148 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 26 tgtgatcttccacagctttcttgaactgc 54
|||||||||||||||||||||||||||||
Sbjct: 4 tgtgatcttccacagctttcttgaactgc 32
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 99 gcagttcaataaagctgtgggaaatttcagaga 131
|||||||||||||||||||||||| | ||||||
Sbjct: 78 gcagttcaataaagctgtgggaaactgcagaga 110
>RF00648;MIR396;AASG02002614.1/17574-17698 3988:Ricinus communis
(castor bean)
Length = 125
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 27 gtgatcttccacagctttcttgaactg 53
|||||||||||||||||||||||||||
Sbjct: 5 gtgatcttccacagctttcttgaactg 31
>RF00648;MIR396;EU941272.1/182-300 4577:Zea mays
Length = 119
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 99 gcagttcaataaagctgtgggaaatttcagaga 131
|||||||||||||||||||||||| | ||||||
Sbjct: 87 gcagttcaataaagctgtgggaaactgcagaga 119
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 tcttccacagctttcttgaactgc 54
||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgc 32
>RF00648;MIR396;ABIM01023164.1/6366-6248 3649:Carica papaya
(papaya)
Length = 119
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 26 tgtgatcttccacagctttcttgaactg 53
|||| |||||||||||||||||||||||
Sbjct: 4 tgtggtcttccacagctttcttgaactg 31
>RF00648;MIR396;ABIM01011222.1/24137-24037 3649:Carica papaya
(papaya)
Length = 101
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 tcttccacagctttcttgaactgc 54
||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgc 32
>RF00648;MIR396;AC006250.4/85478-85629 3702:Arabidopsis thaliana
(thale cress)
Length = 152
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 tcttccacagctttcttgaactgc 54
||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgc 32
>RF00648;MIR396;AARH01002977.1/26105-26230 3694:Populus
trichocarpa
Length = 126
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 tcttccacagctttcttgaactgc 54
||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgc 32
>RF00648;MIR396;AARH01007577.1/181152-181286 3694:Populus
trichocarpa
Length = 135
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 tcttccacagctttcttgaactgc 54
||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgc 32
>RF00648;MIR396;AASG02007435.1/277-442 3988:Ricinus communis
(castor bean)
Length = 166
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 tcttccacagctttcttgaactgc 54
||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgc 32
>RF00648;MIR396;AC153121.15/56895-56790 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 tcttccacagctttcttgaactgc 54
||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgc 32
>RF00648;MIR396;AP010531.1/68027-68126 34305:Lotus japonicus
Length = 100
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 tcttccacagctttcttgaactgc 54
||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgc 32
>RF00648;MIR396;AM489352.2/7330-7448 29760:Vitis vinifera
Length = 119
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 tcttccacagctttcttgaactgc 54
||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgc 32
