miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AL732351.2/3841-4022 4530:Oryza sativa (rice)
Length = 182
Score = 95.6 bits (48), Expect = 2e-19
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 10 gggcatgctttccacaggctttcttgaactgtgaactcgtgggggtgt 57
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggcatgctttccacaggctttcttgaactgtgaactcgtgggggtgt 48
Score = 79.8 bits (40), Expect = 1e-14
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 116 cctgttgatggttcaagaaagcccatggaaaccatgccgc 155
||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 cctgttgatggttcaagaaagcccatggaaaccatgccgc 182
>RF00648;MIR396;ABXC01004473.1/64146-64350 4558:Sorghum bicolor
(sorghum)
Length = 205
Score = 91.7 bits (46), Expect = 3e-18
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 10 gggcatgctttccacaggctttcttgaactgtgaactcgtgggggt 55
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggcatgctttccacaggctttcttgaactgtgaactcgtgggggt 46
Score = 73.8 bits (37), Expect = 6e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 116 cctgttgatggttcaagaaagcccatggaaaccatgc 152
|||||||||||||||||||||||||||||||||||||
Sbjct: 166 cctgttgatggttcaagaaagcccatggaaaccatgc 202
>RF00648;MIR396;EU950590.1/116-359 4577:Zea mays
Length = 244
Score = 85.7 bits (43), Expect = 2e-16
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 10 gggcatgctttccacaggctttcttgaactgtgaactcgtggg 52
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggcatgctttccacaggctttcttgaactgtgaactcgtggg 43
Score = 73.8 bits (37), Expect = 6e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 116 cctgttgatggttcaagaaagcccatggaaaccatgc 152
|||||||||||||||||||||||||||||||||||||
Sbjct: 205 cctgttgatggttcaagaaagcccatggaaaccatgc 241
>RF00648;MIR396;AP004043.3/15829-15652 39947:Oryza sativa Japonica
Group
Length = 178
Score = 67.9 bits (34), Expect = 4e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 13 catgctttccacaggctttcttgaactgtgaactcgtg 50
|||||| |||||||||||||||||||||||||||||||
Sbjct: 4 catgctctccacaggctttcttgaactgtgaactcgtg 41
>RF00648;MIR396;ABXC01003010.1/105635-105521 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 20 tccacaggctttcttgaactgtgaactcg 48
|||||||||||||||||||||||||||||
Sbjct: 11 tccacaggctttcttgaactgtgaactcg 39
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 118 tgttgatggttcaagaaagcccatggaaaccatg 151
||||||||||||||||||| || |||||| ||||
Sbjct: 78 tgttgatggttcaagaaagtccttggaaaacatg 111
>RF00648;MIR396;AC226038.1/95545-95657 4641:Musa acuminata
Length = 113
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 11 ggcatgctttccacaggctttcttgaactgtgaact 46
|||||| | |||||||||||||||||||||||||||
Sbjct: 2 ggcatgttctccacaggctttcttgaactgtgaact 37
