miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00704;MIR397;ABXC01002436.1/11519-11410 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 61.9 bits (31), Expect = 5e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 23 gcaaaggcatcattgagtgcagcgttgatga 53
|||||||||||||||||||||||||||||||
Sbjct: 2 gcaaaggcatcattgagtgcagcgttgatga 32
Score = 61.9 bits (31), Expect = 5e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 169 gcaaaggcatcattgagtgcagcgttgatga 199
|||||||||||||||||||||||||||||||
Sbjct: 2 gcaaaggcatcattgagtgcagcgttgatga 32
>RF00704;MIR397;AP003766.3/37038-37149 39947:Oryza sativa Japonica
Group
Length = 112
Score = 58.0 bits (29), Expect = 7e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 24 caaaggcatcattgagtgcagcgttgatgaaca 56
|||| ||||||||||||||||||||||||||||
Sbjct: 3 caaatgcatcattgagtgcagcgttgatgaaca 35
Score = 58.0 bits (29), Expect = 7e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 170 caaaggcatcattgagtgcagcgttgatgaaca 202
|||| ||||||||||||||||||||||||||||
Sbjct: 3 caaatgcatcattgagtgcagcgttgatgaaca 35
>RF00704;MIR397;AK109752.1/55-170 39947:Oryza sativa Japonica
Group
Length = 116
Score = 52.0 bits (26), Expect = 5e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 26 aaggcatcattgagtgcagcgttgatgaac 55
||||||| ||||||||||||||||||||||
Sbjct: 5 aaggcattattgagtgcagcgttgatgaac 34
Score = 52.0 bits (26), Expect = 5e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 172 aaggcatcattgagtgcagcgttgatgaac 201
||||||| ||||||||||||||||||||||
Sbjct: 5 aaggcattattgagtgcagcgttgatgaac 34
>RF00704;MIR397;EF148834.1/45-164 3695:Populus trichocarpa x
Populus deltoides
Length = 120
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 30 catcattgagtgcagcgttgatgaa 54
|||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatgaa 33
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 176 catcattgagtgcagcgttgatgaa 200
|||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatgaa 33
>RF00704;MIR397;CAAP02007812.1/4570-4691 29760:Vitis vinifera
Length = 122
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 30 catcattgagtgcagcgttgatgaa 54
|||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatgaa 33
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 176 catcattgagtgcagcgttgatgaa 200
|||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatgaa 33
>RF00704;MIR397;ABIM01007603.1/10199-10104 3649:Carica papaya
(papaya)
Length = 96
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 30 catcattgagtgcagcgttgatga 53
||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatga 32
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 176 catcattgagtgcagcgttgatga 199
||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatga 32
>RF00704;MIR397;AC189186.2/40150-40047 51351:Brassica rapa subsp.
pekinensis
Length = 104
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 catcattgagtgcagcgttgatg 52
|||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatg 31
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 176 catcattgagtgcagcgttgatg 198
|||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatg 31
>RF00704;MIR397;AC012392.1/95144-95040 3702:Arabidopsis thaliana
(thale cress)
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 catcattgagtgcagcgttgatg 52
|||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatg 31
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 176 catcattgagtgcagcgttgatg 198
|||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatg 31
