miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;CU223654.1/49-129 80863:Populus tremula x Populus
           alba
          Length = 81

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 94  catgtgttctcaggtcgcccctg 116
           |||||||||||||||||||||||
Sbjct: 49  catgtgttctcaggtcgcccctg 71




>RF00695;MIR398;AARH01000462.1/173558-173473 3694:Populus
           trichocarpa
          Length = 86

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 94  catgtgttctcaggtcgcccctg 116
           |||||||||||||||||||||||
Sbjct: 54  catgtgttctcaggtcgcccctg 76




>RF00695;MIR398;AASG02014986.1/899-1036 3988:Ricinus communis
           (castor bean)
          Length = 138

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 94  catgtgttctcaggtcgcccctg 116
           |||||||||||||||||||||||
Sbjct: 106 catgtgttctcaggtcgcccctg 128




>RF00695;MIR398;AC146941.8/124295-124199 3880:Medicago truncatula
           (barrel medic)
          Length = 97

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 94  catgtgttctcaggtcgcccctg 116
           |||||||||||||||||||||||
Sbjct: 65  catgtgttctcaggtcgcccctg 87




>RF00695;MIR398;AM426431.2/9842-9931 29760:Vitis vinifera
          Length = 90

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 94  catgtgttctcaggtcgcccctg 116
           |||||||||||||||||||||||
Sbjct: 58  catgtgttctcaggtcgcccctg 80




>RF00695;MIR398;ABIM01009168.1/9183-9310 3649:Carica papaya (papaya)
          Length = 128

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 96  tgtgttctcaggtcgcccctgttggg 121
           ||||||||||||||||||||| ||||
Sbjct: 98  tgtgttctcaggtcgcccctgctggg 123