miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;EU869094.1/300-186 39946:Oryza sativa Indica Group
Length = 115
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 101 tgtgttctcaggtcacccctttgggtt 127
|||||||||||||||||||||||||||
Sbjct: 85 tgtgttctcaggtcacccctttgggtt 111
Score = 50.1 bits (25), Expect = 1e-05
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 23 gctgaacccacaggagtgtcactgagaacacaggtgc 59
|||||||||| ||||||| |||||||||||||||||
Sbjct: 1 gctgaacccagaggagtggtactgagaacacaggtgc 37
>RF00695;MIR398;AC232704.1/64360-64470 4081:Solanum lycopersicum
Length = 111
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 100 ttgtgttctcaggtcacccctttggg 125
||||||||||||||||||||||||||
Sbjct: 80 ttgtgttctcaggtcacccctttggg 105
>RF00695;MIR398;AM470404.1/7821-7717 29760:Vitis vinifera
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 100 ttgtgttctcaggtcacccctttggg 125
||||||||||||||||||||||||||
Sbjct: 74 ttgtgttctcaggtcacccctttggg 99
>RF00695;MIR398;AARH01004353.1/90880-90989 3694:Populus trichocarpa
Length = 110
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 101 tgtgttctcaggtcacccctttggg 125
|||||||||||||||||||||||||
Sbjct: 80 tgtgttctcaggtcacccctttggg 104
>RF00695;MIR398;AASG02002548.1/28926-28824 3988:Ricinus communis
(castor bean)
Length = 103
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 101 tgtgttctcaggtcacccctttggg 125
|||||||||||||||||||||||||
Sbjct: 73 tgtgttctcaggtcacccctttggg 97
>RF00695;MIR398;ABIM01000776.1/2623-2725 3649:Carica papaya (papaya)
Length = 103
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 100 ttgtgttctcaggtcacccctttg 123
||||||||||||||||||||||||
Sbjct: 72 ttgtgttctcaggtcacccctttg 95
>RF00695;MIR398;EU549614.1/303-407 3702:Arabidopsis thaliana (thale
cress)
Length = 105
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 100 ttgtgttctcaggtcacccctttg 123
||||||||||||||||||||||||
Sbjct: 74 ttgtgttctcaggtcacccctttg 97
>RF00695;MIR398;CR962131.2/106004-106111 3880:Medicago truncatula
(barrel medic)
Length = 108
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 100 ttgtgttctcaggtcacccctttg 123
||||||||||||||||||||||||
Sbjct: 77 ttgtgttctcaggtcacccctttg 100
>RF00695;MIR398;AP006112.1/24509-24640 34305:Lotus japonicus
Length = 132
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 100 ttgtgttctcaggtcacccctttg 123
||||||||||||||||||||||||
Sbjct: 101 ttgtgttctcaggtcacccctttg 124
