miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;ABXC01002522.1/3232-3121 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 108 cttgccaaaggagaattgccctgccattc 136
|||||||||||||||||||||||||||||
Sbjct: 80 cttgccaaaggagaattgccctgccattc 108
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 21 gagaattacagtgcggttctcctctggca 49
|||||| ||||||||||||||||||||||
Sbjct: 3 gagaatcacagtgcggttctcctctggca 31
>RF00445;mir-399;ABIM01002717.1/30662-30788 3649:Carica papaya
(papaya)
Length = 127
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 109 ttgccaaaggagaattgccctgccattc 136
||||||||||||||||||||||||||||
Sbjct: 96 ttgccaaaggagaattgccctgccattc 123
>RF00445;mir-399;AARH01002119.1/15983-15882 3694:Populus trichocarpa
Length = 102
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 109 ttgccaaaggagaattgccctgccattc 136
||||||||||||||||||||||||||||
Sbjct: 71 ttgccaaaggagaattgccctgccattc 98
>RF00445;mir-399;AARH01002114.1/15624-15718 3694:Populus trichocarpa
Length = 95
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 110 tgccaaaggagaattgccctgccattca 137
||||||||||||||||||||||||||||
Sbjct: 65 tgccaaaggagaattgccctgccattca 92
>RF00445;mir-399;AM467681.2/18299-18208 29760:Vitis vinifera
Length = 92
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 109 ttgccaaaggagaattgccctgccattc 136
||||||||||||||||||||||||||||
Sbjct: 61 ttgccaaaggagaattgccctgccattc 88
>RF00445;mir-399;AAAA02019779.1/19949-19837 39946:Oryza sativa
Indica Group
Length = 113
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 110 tgccaaaggagaattgccctgccattca 137
||||||||||||||||||||||||||||
Sbjct: 83 tgccaaaggagaattgccctgccattca 110
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 19 gtgagaattacagtgcggttctcctctggca 49
|||||||| ||||||| ||||||||||||||
Sbjct: 1 gtgagaatcacagtgcagttctcctctggca 31
>RF00445;mir-399;AACV01003693.1/42206-42110 39947:Oryza sativa
Japonica Group
Length = 97
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 110 tgccaaaggagaattgccctgccattca 137
||||||||||||||||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctgccattca 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 19 gtgagaattacagtgcggttctcctctggca 49
|||||||| |||||||| |||||||||||||
Sbjct: 1 gtgagaatcacagtgcgattctcctctggca 31
>RF00445;mir-399;ABXC01006771.1/37202-37314 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 110 tgccaaaggagaattgccctgccattc 136
|||||||||||||||||||||||||||
Sbjct: 83 tgccaaaggagaattgccctgccattc 109
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 22 agaattacagtgcggttctcctctggcacggagg 55
||||| |||||||||||||||||||||| |||||
Sbjct: 4 agaatcacagtgcggttctcctctggcatggagg 37
>RF00445;mir-399;EU626443.1/55199-55104 47615:Gossypioides kirkii
Length = 96
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 109 ttgccaaaggagaattgccctgccattca 137
||||||||||||| |||||||||||||||
Sbjct: 65 ttgccaaaggagatttgccctgccattca 93
>RF00445;mir-399;AP008208.1/7649784-7649899 39947:Oryza sativa
Japonica Group
Length = 116
Score = 50.1 bits (25), Expect = 9e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 19 gtgagaattacagtgcggttctcctctggcacggagg 55
|||||||| ||||||| |||||||||||||| |||||
Sbjct: 1 gtgagaatcacagtgcagttctcctctggcatggagg 37
>RF00445;mir-399;AAAA02017707.1/12909-13018 39946:Oryza sativa
Indica Group
Length = 110
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 110 tgccaaaggagaattgccctgccattca 137
|||||||||||||||||||||| |||||
Sbjct: 80 tgccaaaggagaattgccctgcgattca 107
>RF00445;mir-399;AC160628.37/99250-99151 3880:Medicago truncatula
(barrel medic)
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 109 ttgccaaaggagaattgccctgccatt 135
||||||||||||| |||||||||||||
Sbjct: 69 ttgccaaaggagatttgccctgccatt 95
>RF00445;mir-399;AC160628.37/109895-109796 3880:Medicago truncatula
(barrel medic)
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 109 ttgccaaaggagaattgccctgccatt 135
||||||||||||| |||||||||||||
Sbjct: 69 ttgccaaaggagatttgccctgccatt 95
>RF00445;mir-399;ABXC01002232.1/126477-126594 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 110 tgccaaaggagaattgccctgccattc 136
|||||||||||||||||||||| ||||
Sbjct: 88 tgccaaaggagaattgccctgcgattc 114
>RF00445;mir-399;ABXC01006255.1/18853-18743 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 110 tgccaaaggagaattgccctgccattc 136
|||||||||||||||||||||| ||||
Sbjct: 81 tgccaaaggagaattgccctgcgattc 107
>RF00445;mir-399;AACV01002284.1/925-1073 39947:Oryza sativa Japonica
Group
Length = 149
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 110 tgccaaaggagaattgccctgc 131
||||||||||||||||||||||
Sbjct: 119 tgccaaaggagaattgccctgc 140
