miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EF059989.1/156495-156619 29664:Brachypodium
sylvaticum
Length = 125
Score = 99.6 bits (50), Expect = 1e-20
Identities = 71/77 (92%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 27 cgaaatattacatgtgtatctagacgttttttacacatagatacatccgtatttggacaa 86
||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 31 cgaaatattacatgt--atctagactctttttacacatagatacattcgtatttggacaa 88
Query: 87 atttgagacgagtaata 103
||||||||| |||||||
Sbjct: 89 atttgagacaagtaata 105
>RF00906;MIR1122;EU730901.1/65072-65195 15368:Brachypodium
distachyon
Length = 124
Score = 89.7 bits (45), Expect = 1e-17
Identities = 73/81 (90%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 41 tgtatctagacgttttttacacatagatacatccgtatttggacaaatttgagacgagta 100
|||||||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||
Sbjct: 43 tgtatctagacgtttt-tacacatagatacatccgcatttgggcaaatttgagacaagta 101
Query: 101 atagagatcggatggagtaca 121
||| | ||||| ||||||||
Sbjct: 102 ataccggtcggagggagtaca 122
>RF00906;MIR1122;EU730894.1/127135-127259 15368:Brachypodium
distachyon
Length = 125
Score = 87.7 bits (44), Expect = 5e-17
Identities = 83/95 (87%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 27 cgaaatattacatgtgtatctagacgttttttacacatagatacatccgtatttggacaa 86
||||||||||||||| |||||||| ||||||||| ||||||||| ||||||||| |||
Sbjct: 31 cgaaatattacatgt--atctagacactttttacacgtagatacattcgtatttgggcaa 88
Query: 87 atttgagacgagtaatagagatcggatggagtaca 121
||||||||| ||||||| | ||||| ||||||||
Sbjct: 89 atttgagacaagtaataccggtcggagggagtaca 123
>RF00906;MIR1122;EF059989.1/52700-52824 29664:Brachypodium
sylvaticum
Length = 125
Score = 83.8 bits (42), Expect = 8e-16
Identities = 69/77 (89%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 27 cgaaatattacatgtgtatctagacgttttttacacatagatacatccgtatttggacaa 86
||||||||||||||| ||||||||| |||||| |||||||| ||| ||||||||| |||
Sbjct: 31 cgaaatattacatgt--atctagacgctttttaaacatagatgcattcgtatttgggcaa 88
Query: 87 atttgagacgagtaata 103
||||||||| |||||||
Sbjct: 89 atttgagacaagtaata 105
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 73.8 bits (37), Expect = 7e-13
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 41 tgtatctagacgttttttacacatagatacatccgtatttggacaaatttgag 93
|||||||||||| |||||| ||||||||||||| ||||||||||||||||||
Sbjct: 83 tgtatctagacgctttttaagcatagatacatccatatttggacaaatttgag 31
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 73.8 bits (37), Expect = 7e-13
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 41 tgtatctagacgttttttacacatagatacatccgtatttggacaaatttgag 93
||||||||||| |||||| |||||||||||||| ||||||||||||||||||
Sbjct: 43 tgtatctagacactttttagacatagatacatccatatttggacaaatttgag 95
>RF00906;MIR1122;EF059989.1/67137-67261 29664:Brachypodium
sylvaticum
Length = 125
Score = 67.9 bits (34), Expect = 5e-11
Identities = 67/77 (87%), Gaps = 2/77 (2%)
Strand = Plus / Minus
Query: 27 cgaaatattacatgtgtatctagacgttttttacacatagatacatccgtatttggacaa 86
|||||||||||| |||||||| ||| ||||||| |||| |||||||| ||||||| |||
Sbjct: 95 cgaaatattaca--tgtatctaaacgctttttacgcatatatacatccatatttgggcaa 38
Query: 87 atttgagacgagtaata 103
|||||||| |||||||
Sbjct: 37 ttttgagacaagtaata 21
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 67.9 bits (34), Expect = 5e-11
Identities = 61/69 (88%), Gaps = 2/69 (2%)
Strand = Plus / Minus
Query: 27 cgaaatattacatgtgtatctagacgttttttacacatagatacatccgtatttggacaa 86
||||||||||||||| ||||||||| |||||| ||||||||||||| ||| ||| |||
Sbjct: 95 cgaaatattacatgt--atctagacgctttttaggcatagatacatccatatctgggcaa 38
Query: 87 atttgagac 95
|||||||||
Sbjct: 37 atttgagac 29
>RF00906;MIR1122;EF059989.1/222136-222013 29664:Brachypodium
sylvaticum
Length = 124
Score = 63.9 bits (32), Expect = 7e-10
Identities = 84/99 (84%), Gaps = 3/99 (3%)
Strand = Plus / Plus
Query: 22 attgccgaaatattacatgtgtatctagacgttttttacacatagatacatccgtatttg 81
|||| ||||||||||||||| ||||||||| ||||| |||||||||||| ||||||
Sbjct: 26 attgtcgaaatattacatgt--atctagacgcgttttaagaatagatacatccatatttg 83
Query: 82 gacaaatttgagacgagtaatagagatcggatggagtac 120
| |||||||||||| || ||| |||||||| |||||||
Sbjct: 84 ggcaaatttgagacaag-aatttagatcggagggagtac 121
>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
sylvaticum
Length = 115
Score = 61.9 bits (31), Expect = 3e-09
Identities = 49/54 (90%), Gaps = 2/54 (3%)
Strand = Plus / Minus
Query: 29 aaatattacatgtgtatctagacgttttttacacatagatacatccgtatttgg 82
||||||||||||| |||||||||||||||| ||||||||||||| |||||||
Sbjct: 83 aaatattacatgt--atctagacgttttttatgcatagatacatccatatttgg 32
>RF00906;MIR1122;EU730895.1/40339-40463 15368:Brachypodium
distachyon
Length = 125
Score = 60.0 bits (30), Expect = 1e-08
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 54 tttttacacatagatacatccgtatttggacaaatttgagacgagtaatagagatcggat 113
|||||| |||||||||||| | |||||| |||||||||||| ||||||| |||||||
Sbjct: 56 tttttaaacatagatacattcatatttgatcaaatttgagacaagtaatatggatcggag 115
Query: 114 ggagta 119
||||||
Sbjct: 116 ggagta 121
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 60.0 bits (30), Expect = 1e-08
Identities = 60/69 (86%), Gaps = 2/69 (2%)
Strand = Plus / Minus
Query: 27 cgaaatattacatgtgtatctagacgttttttacacatagatacatccgtatttggacaa 86
||||||||||||||| ||||||| | |||||| |||||||||||| ||||||| |||
Sbjct: 94 cgaaatattacatgt--atctagatgctttttaggtatagatacatccatatttgggcaa 37
Query: 87 atttgagac 95
|||||||||
Sbjct: 36 atttgagac 28
>RF00906;MIR1122;EU730900.1/18513-18389 15368:Brachypodium
distachyon
Length = 125
Score = 56.0 bits (28), Expect = 2e-07
Identities = 58/67 (86%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 29 aaatattacatgtgtatctagacgttttttacacatagatacatccgtatttggacaaat 88
||||||||||||| ||||| ||| |||||| ||||||||||||| ||||||| ||||
Sbjct: 33 aaatattacatgt--atctaaacgctttttaggcatagatacatccatatttgggaaaat 90
Query: 89 ttgagac 95
|||||||
Sbjct: 91 ttgagac 97
>RF00906;MIR1122;EF059989.1/55128-55252 29664:Brachypodium
sylvaticum
Length = 125
Score = 56.0 bits (28), Expect = 2e-07
Identities = 58/67 (86%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 27 cgaaatattacatgtgtatctagacgttttttacacatagatacatccgtatttggacaa 86
||||||||||||||| ||||||||| |||||| ||||||| |||| ||||||| |||
Sbjct: 31 cgaaatattacatgt--atctagacgctttttaagaatagatatatccatatttgggcaa 88
Query: 87 atttgag 93
|||||||
Sbjct: 89 atttgag 95
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 52.0 bits (26), Expect = 3e-06
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 64 tagatacatccgtatttggacaaatttgagacgagtaatagagatcggatggagtaca 121
||||||||||||||| | ||||||||| |||| |||||| ||| |||| ||||||||
Sbjct: 60 tagatacatccgtatctagacaaatttaagacaagtaattcagaacggagggagtaca 3
>RF00906;MIR1122;EU730902.1/55282-55158 15368:Brachypodium
distachyon
Length = 125
Score = 52.0 bits (26), Expect = 3e-06
Identities = 59/69 (85%), Gaps = 2/69 (2%)
Strand = Plus / Minus
Query: 27 cgaaatattacatgtgtatctagacgttttttacacatagatacatccgtatttggacaa 86
||||||||||||||| ||||||||| ||||| | |||||||||||| | |||| |||
Sbjct: 95 cgaaatattacatgt--atctagacgcattttagaaatagatacatccatctttgagcaa 38
Query: 87 atttgagac 95
|||||||||
Sbjct: 37 atttgagac 29
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 52.0 bits (26), Expect = 3e-06
Identities = 59/69 (85%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 27 cgaaatattacatgtgtatctagacgttttttacacatagatacatccgtatttggacaa 86
||||||||||||||| ||||||||| |||||| |||||||||||| ||||| |||
Sbjct: 31 cgaaatattacatgt--atctagacgctttttaggaatagatacatccaattttgggcaa 88
Query: 87 atttgagac 95
|||||||||
Sbjct: 89 atttgagac 97
>RF00906;MIR1122;EU730894.1/121201-121325 15368:Brachypodium
distachyon
Length = 125
Score = 52.0 bits (26), Expect = 3e-06
Identities = 65/77 (84%), Gaps = 2/77 (2%)
Strand = Plus / Minus
Query: 27 cgaaatattacatgtgtatctagacgttttttacacatagatacatccgtatttggacaa 86
|||||||||||| |||||||||| | |||||| |||| || |||||| || |||| |||
Sbjct: 95 cgaaatattaca--tgtatctagatgctttttaaacattgacacatccataattgggcaa 38
Query: 87 atttgagacgagtaata 103
||||| ||| |||||||
Sbjct: 37 atttgtgacaagtaata 21
>RF00906;MIR1122;EU730901.1/58586-58463 15368:Brachypodium
distachyon
Length = 124
Score = 50.1 bits (25), Expect = 1e-05
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 41 tgtatctagacgttttttacacatagatacatccgtatttggacaaatttgag 93
|||||||| |||||||||| ||| |||||||| ||| ||||||||||||||
Sbjct: 83 tgtatctaaacgttttttagccatttatacatccatatctggacaaatttgag 31
>RF00906;MIR1122;EF059989.1/222260-222384 29664:Brachypodium
sylvaticum
Length = 125
Score = 50.1 bits (25), Expect = 1e-05
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 41 tgtatctagacgttttttacacatagatacatccgtatttggacaaatt 89
||||||||||||||||||| ||| |||||||| | ||||||||||||
Sbjct: 83 tgtatctagacgttttttatgaatatatacatccatttttggacaaatt 35
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 64 tagatacatccgtatttggacaaatttgagac 95
||||||||||||||||| ||||||||| ||||
Sbjct: 76 tagatacatccgtatttagacaaatttaagac 107
>RF00906;MIR1122;EF059989.1/365637-365513 29664:Brachypodium
sylvaticum
Length = 125
Score = 44.1 bits (22), Expect = 7e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 44 atctagacgttttttacacatagatacatccgtatttg 81
|||||||| ||||||| ||||||||||||| ||||||
Sbjct: 80 atctagacattttttaggcatagatacatccatatttg 43
>RF00906;MIR1122;EF059989.1/74343-74464 29664:Brachypodium
sylvaticum
Length = 122
Score = 44.1 bits (22), Expect = 7e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 41 tgtatctagacgttttttacacatagatacatcc 74
||||||||||||||||||| ||||||||||||
Sbjct: 80 tgtatctagacgttttttaactatagatacatcc 47
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 44.1 bits (22), Expect = 7e-04
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 41 tgtatctagacgttttttac-acatagatacatccgtatttggacaaatttgag 93
|||||||||||||||| || | |||||||| ||| ||||| ||||||||||||
Sbjct: 43 tgtatctagacgttttctagtatatagatacgtccatatttagacaaatttgag 96
