miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730894.1/127135-127259 15368:Brachypodium
distachyon
Length = 125
Score = 188 bits (95), Expect = 1e-47
Identities = 110/115 (95%)
Strand = Plus / Minus
Query: 14 gtacttcctccgaccggtattacttgtctcaaatttgcccaaatacggatgtatctatgt 73
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 122 gtactccctccgaccggtattacttgtctcaaatttgcccaaatacgaatgtatctacgt 63
Query: 74 gtaaaacgtgtctagatacatgtaatatttcgacaagtaattccgaccggaggga 128
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 62 gtaaaaagtgtctagatacatgtaatatttcgacaagtaattccggccggaggga 8
>RF00906;MIR1122;EU730901.1/65072-65195 15368:Brachypodium
distachyon
Length = 124
Score = 168 bits (85), Expect = 1e-41
Identities = 110/117 (94%), Gaps = 1/117 (0%)
Strand = Plus / Minus
Query: 14 gtacttcctccgaccggtattacttgtctcaaatttgcccaaatacggatgtatctatgt 73
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 121 gtactccctccgaccggtattacttgtctcaaatttgcccaaatgcggatgtatctatgt 62
Query: 74 gtaaaacgtgtctagatacatgtaatatttcgacaagtaattccgaccggagggagt 130
|||||| |||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 61 gtaaaa-acgtctagatacatataatatttcgacaagtaattctgaccggagggagt 6
>RF00906;MIR1122;EF059989.1/156495-156619 29664:Brachypodium
sylvaticum
Length = 125
Score = 165 bits (83), Expect = 2e-40
Identities = 110/119 (92%)
Strand = Plus / Minus
Query: 12 tagtacttcctccgaccggtattacttgtctcaaatttgcccaaatacggatgtatctat 71
||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 124 tagtactctctccgaccggtattacttgtctcaaatttgtccaaatacgaatgtatctat 65
Query: 72 gtgtaaaacgtgtctagatacatgtaatatttcgacaagtaattccgaccggagggagt 130
|||||||| | |||||||||||||||||||||||||||| |||||| ||||||| ||||
Sbjct: 64 gtgtaaaaagagtctagatacatgtaatatttcgacaagcaattccaaccggagagagt 6
>RF00906;MIR1122;EF059989.1/52700-52824 29664:Brachypodium
sylvaticum
Length = 125
Score = 151 bits (76), Expect = 3e-36
Identities = 106/116 (91%)
Strand = Plus / Minus
Query: 15 tacttcctccgaccggtattacttgtctcaaatttgcccaaatacggatgtatctatgtg 74
|||| ||||||||| |||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 121 tactccctccgacccatattacttgtctcaaatttgcccaaatacgaatgcatctatgtt 62
Query: 75 taaaacgtgtctagatacatgtaatatttcgacaagtaattccgaccggagggagt 130
||||| | ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 61 taaaaagcgtctagatacatgtaatatttcgacaagtaattccagccggagggagt 6
>RF00906;MIR1122;EF059989.1/67137-67261 29664:Brachypodium
sylvaticum
Length = 125
Score = 143 bits (72), Expect = 7e-34
Identities = 105/116 (90%)
Strand = Plus / Plus
Query: 15 tacttcctccgaccggtattacttgtctcaaatttgcccaaatacggatgtatctatgtg 74
|||| ||||||||||||||||||||||||||| ||||||||||| |||||||| |||| |
Sbjct: 5 tactccctccgaccggtattacttgtctcaaaattgcccaaatatggatgtatatatgcg 64
Query: 75 taaaacgtgtctagatacatgtaatatttcgacaagtaattccgaccggagggagt 130
||||| | || ||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 65 taaaaagcgtttagatacatgtaatatttcgaaaagtaattccggacggagggagt 120
>RF00906;MIR1122;EF059989.1/222136-222013 29664:Brachypodium
sylvaticum
Length = 124
Score = 107 bits (54), Expect = 4e-23
Identities = 69/74 (93%)
Strand = Plus / Minus
Query: 36 cttgtctcaaatttgcccaaatacggatgtatctatgtgtaaaacgtgtctagatacatg 95
||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||
Sbjct: 100 cttgtctcaaatttgcccaaatatggatgtatctattcttaaaacgcgtctagatacatg 41
Query: 96 taatatttcgacaa 109
||||||||||||||
Sbjct: 40 taatatttcgacaa 27
>RF00906;MIR1122;EU730895.1/40339-40463 15368:Brachypodium
distachyon
Length = 125
Score = 103 bits (52), Expect = 6e-22
Identities = 76/84 (90%)
Strand = Plus / Minus
Query: 31 tattacttgtctcaaatttgcccaaatacggatgtatctatgtgtaaaacgtgtctagat 90
|||||||||||||||||||| |||||| | |||||||||||| ||||| ||| ||||||
Sbjct: 105 tattacttgtctcaaatttgatcaaatatgaatgtatctatgtttaaaaagtgactagat 46
Query: 91 acatgtaatatttcgacaagtaat 114
| ||||||||||||||||||||||
Sbjct: 45 aaatgtaatatttcgacaagtaat 22
>RF00906;MIR1122;EU730894.1/121201-121325 15368:Brachypodium
distachyon
Length = 125
Score = 103 bits (52), Expect = 6e-22
Identities = 88/100 (88%)
Strand = Plus / Plus
Query: 15 tacttcctccgaccggtattacttgtctcaaatttgcccaaatacggatgtatctatgtg 74
|||| ||||||||| ||||||||||| ||||||||||||| || |||||| || ||||
Sbjct: 5 tactccctccgacccatattacttgtcacaaatttgcccaattatggatgtgtcaatgtt 64
Query: 75 taaaacgtgtctagatacatgtaatatttcgacaagtaat 114
||||| | |||||||||||||||||||||||||||||||
Sbjct: 65 taaaaagcatctagatacatgtaatatttcgacaagtaat 104
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 103 bits (52), Expect = 6e-22
Identities = 88/100 (88%)
Strand = Plus / Plus
Query: 15 tacttcctccgaccggtattacttgtctcaaatttgcccaaatacggatgtatctatgtg 74
|||||||||||| | ||| | |||||||||||||||||| ||| |||||||||||||
Sbjct: 5 tacttcctccgatccatatcaattgtctcaaatttgcccagatatggatgtatctatgcc 64
Query: 75 taaaacgtgtctagatacatgtaatatttcgacaagtaat 114
||||| | ||||||||||||||||||||||||||| ||||
Sbjct: 65 taaaaagcgtctagatacatgtaatatttcgacaactaat 104
>RF00906;MIR1122;EU730902.1/55282-55158 15368:Brachypodium
distachyon
Length = 125
Score = 89.7 bits (45), Expect = 9e-18
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 36 cttgtctcaaatttgcccaaatacggatgtatctatgtgtaaaacgtgtctagatacatg 95
|||||||||||||||| |||| | |||||||||||| | ||||| | |||||||||||||
Sbjct: 26 cttgtctcaaatttgctcaaagatggatgtatctatttctaaaatgcgtctagatacatg 85
Query: 96 taatatttcgaca 108
|||||||||||||
Sbjct: 86 taatatttcgaca 98
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 87.7 bits (44), Expect = 4e-17
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 41 ctcaaatttgcccaaatacggatgtatctatgtgtaaaacgtgtctagatacatgtaata 100
|||||||||| ||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 95 ctcaaatttgtccaaatatggatgtatctatgtctaaaaagtgtctagatacatgtaata 36
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 85.7 bits (43), Expect = 1e-16
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 36 cttgtctcaaatttgcccaaatacggatgtatctatgtgtaaaacgtgtctagatacatg 95
||||||||||||||||||||| |||||||||||| ||||| | |||||||||||||
Sbjct: 100 cttgtctcaaatttgcccaaaattggatgtatctattcctaaaaagcgtctagatacatg 41
Query: 96 taatatttcgacaag 110
|||||||||||||||
Sbjct: 40 taatatttcgacaag 26
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 85.7 bits (43), Expect = 1e-16
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 38 tgtctcaaatttgcccaaatacggatgtatctatgtgtaaaacgtgtctagatacatgta 97
||||||||||||||||||||| |||||||||||| ||||| | ||||||||||||||
Sbjct: 27 tgtctcaaatttgcccaaatatggatgtatctatacctaaaaagcatctagatacatgta 86
Query: 98 atatttcgaca 108
|||||||||||
Sbjct: 87 atatttcgaca 97
>RF00906;MIR1122;EU730898.1/54746-54622 15368:Brachypodium
distachyon
Length = 125
Score = 85.7 bits (43), Expect = 1e-16
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 36 cttgtctcaaatttgcccaaatacggatgtatctatgtgtaaaacgtgtctagatacatg 95
|||||||||||||||| |||| | ||||||||||| | ||||| |||||||||||||||
Sbjct: 26 cttgtctcaaatttgctcaaaaatagatgtatctatttctaaaaagtgtctagatacatg 85
Query: 96 taatatttcgacaag 110
|||||||| ||||||
Sbjct: 86 taatattttgacaag 100
>RF00906;MIR1122;EU730900.1/18513-18389 15368:Brachypodium
distachyon
Length = 125
Score = 83.8 bits (42), Expect = 6e-16
Identities = 69/78 (88%)
Strand = Plus / Minus
Query: 37 ttgtctcaaatttgcccaaatacggatgtatctatgtgtaaaacgtgtctagatacatgt 96
||||||||||||| |||||||| ||||||||||||| ||||| | || |||||||||||
Sbjct: 99 ttgtctcaaattttcccaaatatggatgtatctatgcctaaaaagcgtttagatacatgt 40
Query: 97 aatatttcgacaagtaat 114
||||||| ||||| ||||
Sbjct: 39 aatattttgacaattaat 22
>RF00906;MIR1122;EF059989.1/55128-55252 29664:Brachypodium
sylvaticum
Length = 125
Score = 83.8 bits (42), Expect = 6e-16
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 36 cttgtctcaaatttgcccaaatacggatgtatctatgtgtaaaacgtgtctagatacatg 95
|||| |||||||||||||||||| |||| ||||||| ||||| | |||||||||||||
Sbjct: 100 cttgactcaaatttgcccaaatatggatatatctattcttaaaaagcgtctagatacatg 41
Query: 96 taatatttcgacaa 109
||||||||||||||
Sbjct: 40 taatatttcgacaa 27
>RF00906;MIR1122;EU730901.1/108914-109038 15368:Brachypodium
distachyon
Length = 125
Score = 77.8 bits (39), Expect = 3e-14
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 36 cttgtctcaaatttgcccaaatacggatgtatctatgtgtaaaacgtgtctagatacatg 95
||||||||||| |||| |||| | |||||||||||| ||||| |||||||||||||||
Sbjct: 26 cttgtctcaaagttgctcaaaaatggatgtatctattcataaaaagtgtctagatacatg 85
Query: 96 taatatttcgacaag 110
||| |||||||||||
Sbjct: 86 taagatttcgacaag 100
>RF00906;MIR1122;EU730899.1/90906-91030 15368:Brachypodium
distachyon
Length = 125
Score = 77.8 bits (39), Expect = 3e-14
Identities = 66/75 (88%)
Strand = Plus / Minus
Query: 36 cttgtctcaaatttgcccaaatacggatgtatctatgtgtaaaacgtgtctagatacatg 95
||||||||||||||| ||||| | | |||||||||| ||||| |||||||||||||||
Sbjct: 100 cttgtctcaaatttgaccaaaaatgaatgtatctattcctaaaaagtgtctagatacatg 41
Query: 96 taatatttcgacaag 110
||||||||| |||||
Sbjct: 40 taatatttcaacaag 26
>RF00906;MIR1122;EU730899.1/99199-99323 15368:Brachypodium
distachyon
Length = 125
Score = 77.8 bits (39), Expect = 3e-14
Identities = 66/75 (88%)
Strand = Plus / Minus
Query: 36 cttgtctcaaatttgcccaaatacggatgtatctatgtgtaaaacgtgtctagatacatg 95
||||||||||||||||||||| | |||||||||||| | | |||||||||||||||
Sbjct: 100 cttgtctcaaatttgcccaaaaatggatgtatctattccttcgaggtgtctagatacatg 41
Query: 96 taatatttcgacaag 110
|||||||||||||||
Sbjct: 40 taatatttcgacaag 26
>RF00906;MIR1122;EU730902.1/94507-94383 15368:Brachypodium
distachyon
Length = 125
Score = 75.8 bits (38), Expect = 1e-13
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 37 ttgtctcaaatttgcccaaatacggatgtatctatgtgtaaaacgtgtctagatacatgt 96
|||||||||||||||||||| | |||||||||||| ||||| | || ||||||||||
Sbjct: 27 ttgtctcaaatttgcccaaaaatggatgtatctattcctaaaaggcgtttagatacatgc 86
Query: 97 aatatttcgacaag 110
||||||||||||||
Sbjct: 87 aatatttcgacaag 100
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 71.9 bits (36), Expect = 2e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 41 ctcaaatttgcccaaatacggatgtatctatgtgtaaaacgtgtctagatacatgtaata 100
|||||||||| ||||||| ||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 31 ctcaaatttgtccaaatatggatgtatctatgcttaaaaagcgtctagatacatgtaata 90
>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
sylvaticum
Length = 115
Score = 63.9 bits (32), Expect = 5e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 51 cccaaatacggatgtatctatgtgtaaaacgtgtctagatacatgtaatatttcgacaag 110
|||||||| ||||||||||||| ||||| ||||||||||||||||||||| |||||
Sbjct: 31 cccaaatatggatgtatctatgcataaaaaacgtctagatacatgtaatattttgacaat 90
Query: 111 taat 114
||||
Sbjct: 91 taat 94
>RF00906;MIR1122;EU730902.1/42384-42258 15368:Brachypodium
distachyon
Length = 127
Score = 60.0 bits (30), Expect = 8e-09
Identities = 66/77 (85%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 36 cttgtctcaaatttgcccaaatacggatgtatctatgtgtaaaa--cgtgtctagataca 93
||||||||||||| |||||| | |||||||||||| ||||| | |||||||||||
Sbjct: 26 cttgtctcaaattaacccaaaaatggatgtatctattcctaaaaaacacgtctagataca 85
Query: 94 tgtaatatttcgacaag 110
|||||||||||||||||
Sbjct: 86 tgtaatatttcgacaag 102
>RF00906;MIR1122;EU730898.1/63863-63739 15368:Brachypodium
distachyon
Length = 125
Score = 60.0 bits (30), Expect = 8e-09
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 37 ttgtctcaaatttgcccaaatacggatgtatctatgtgtaaaacgtgtctagatacatgt 96
|||||||||||||||||||| | |||||||||| ||||| | ||||||||||| ||
Sbjct: 99 ttgtctcaaatttgcccaaaattgaatgtatctattactaaaaagcgtctagatacacgt 40
Query: 97 aatatttcgacaag 110
||| ||||||||||
Sbjct: 39 aatgtttcgacaag 26
>RF00906;MIR1122;EF059989.1/54267-54145 29664:Brachypodium
sylvaticum
Length = 123
Score = 58.0 bits (29), Expect = 3e-08
Identities = 62/72 (86%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 36 cttgtctcaaatttgcccaaatacggatgtatctatgtgtaaaacgtgtctagatacatg 95
|||||||||||||| ||||| | |||||||||||| | |||| | ||||||||||||
Sbjct: 26 cttgtctcaaattt--ccaaaaatggatgtatctattttaaaaaaatatctagatacatg 83
Query: 96 taatatttcgac 107
||||||||||||
Sbjct: 84 taatatttcgac 95
>RF00906;MIR1122;EF059989.1/223398-223521 29664:Brachypodium
sylvaticum
Length = 124
Score = 56.0 bits (28), Expect = 1e-07
Identities = 71/84 (84%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 31 tattacttgtctcaaatttgcccaaatacggatgtatctatgtgtaaaacgtgtctagat 90
||||| ||||||| |||||| ||||||| ||||||| ||| ||||| | |||| |||
Sbjct: 21 tattaattgtctcgaatttgtccaaatatagatgtatttatacctaaaaag-gtctggat 79
Query: 91 acatgtaatatttcgacaagtaat 114
||||||||||||||||||| ||||
Sbjct: 80 acatgtaatatttcgacaattaat 103
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 50.1 bits (25), Expect = 8e-06
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 82 tgtctagatacatgtaatatttcgacaagtaattccgaccggagggagt 130
||||||||||||| | | |||||||||||||||| || ||||||||||
Sbjct: 62 tgtctagatacatccattttttcgacaagtaattcagaacggagggagt 110
>RF00906;MIR1122;EF059989.1/365637-365513 29664:Brachypodium
sylvaticum
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 53 caaatacggatgtatctatgtgtaaaacgtgtctagatacatgtaata 100
|||||| ||||||||||||| ||||| ||||||||| |||||||||
Sbjct: 43 caaatatggatgtatctatgcctaaaaaatgtctagatgcatgtaata 90
>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
distachyon
Length = 126
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 83 gtctagatacatgtaatatttcga 106
||||||||||||||||||||||||
Sbjct: 53 gtctagatacatgtaatatttcga 30
>RF00906;MIR1122;EF059989.1/222260-222384 29664:Brachypodium
sylvaticum
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 83 gtctagatacatgtaatatttcgacaag 110
|||||||||||||||| |||||||||||
Sbjct: 73 gtctagatacatgtaagatttcgacaag 100
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 36 cttgtctcaaatttgcccaaatacggatgtatcta 70
||||||| ||||||| | |||||||||||||||||
Sbjct: 110 cttgtcttaaatttgtctaaatacggatgtatcta 76
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 32 attacttgtctcaaatttgcccaaatacggatgtatcta 70
||||||||||| ||||||| | | |||||||||||||||
Sbjct: 22 attacttgtcttaaatttgtctagatacggatgtatcta 60
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 104 cgacaagtaattccgaccggagggagt 130
|||||||||||||||| ||||||||||
Sbjct: 84 cgacaagtaattccgaacggagggagt 110
>RF00906;MIR1122;EU730902.1/30283-30160 15368:Brachypodium
distachyon
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 63/75 (84%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 36 cttgtctcaaatttgcccaaatacggatgtatctatgtgtaaaacgtgtctagatacatg 95
||||||||||||||||||||| | |||||| |||| | ||||| | || ||||| |||
Sbjct: 26 cttgtctcaaatttgcccaaa-aatgatgtagctatttctaaaaagcgtttagatgcatc 84
Query: 96 taatatttcgacaag 110
| |||||||||||||
Sbjct: 85 tgatatttcgacaag 99
>RF00906;MIR1122;EF059989.1/159537-159414 29664:Brachypodium
sylvaticum
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 83 gtctagatacatgtaatatttcg 105
|||||||||||||||||||||||
Sbjct: 72 gtctagatacatgtaatatttcg 94
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 105 gacaagtaattccgaccggagggagt 130
||||||||||||||| ||||||||||
Sbjct: 31 gacaagtaattccgaacggagggagt 6
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 105 gacaagtaattccgaccggagggagt 130
||||||||||||||| ||||||||||
Sbjct: 85 gacaagtaattccgaacggagggagt 110
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 105 gacaagtaattccgaccggagggagt 130
||||||||||||||| ||||||||||
Sbjct: 31 gacaagtaattccgaacggagggagt 6
