miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY963808.1/8398-8494 4565:Triticum aestivum
(bread wheat)
Length = 97
Score = 77.8 bits (39), Expect = 2e-14
Identities = 68/77 (88%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 1 tactccctccgatccatattatttgccgctgatttagtg---caactttgtactaaatca 57
||||||||||| ||||||||| ||| | |||||||||| ||||||||||||||||||
Sbjct: 5 tactccctccgttccatattacttgtcactgatttagtattacaactttgtactaaatca 64
Query: 58 gcgacaactaatatgga 74
||||||| |||||||||
Sbjct: 65 gcgacaagtaatatgga 81
Score = 61.9 bits (31), Expect = 1e-09
Identities = 72/85 (84%), Gaps = 3/85 (3%)
Strand = Plus / Minus
Query: 5 ccctccgatccatattatttgccgctgatttagtgcaactttgta---ctaaatcagcga 61
||||||| ||||||||| ||| |||||||||||| ||| ||||| ||||||||| ||
Sbjct: 89 ccctccgttccatattacttgtcgctgatttagtacaaagttgtaatactaaatcagtga 30
Query: 62 caactaatatggataggagggagta 86
||| ||||||||| ||||||||||
Sbjct: 29 caagtaatatggaacggagggagta 5
>RF00906;MIR1122;D30809.1/4836-4921 4565:Triticum aestivum (bread
wheat)
Length = 86
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 31 gatttagtgcaactttgtactaaatcagcgaca 63
|||||||| ||||||||||||||||||||||||
Sbjct: 27 gatttagtacaactttgtactaaatcagcgaca 59
>RF00906;MIR1122;X95256.1/1628-1548 4513:Hordeum vulgare
Length = 81
Score = 56.0 bits (28), Expect = 7e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 51 taaatcagcgacaactaatatggataggagggagta 86
|||||||||||||| |||||||||| ||||||||||
Sbjct: 42 taaatcagcgacaattaatatggatcggagggagta 77
Score = 56.0 bits (28), Expect = 7e-08
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1 tactccctccgatccatattatttgccgctgattta 36
||||||||||||||||||||| ||| ||||||||||
Sbjct: 77 tactccctccgatccatattaattgtcgctgattta 42
Score = 46.1 bits (23), Expect = 7e-05
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 48 tactaaatcagcgacaactaatatggataggagggagta 86
||||||||||||||||| ||||||| | ||||||||||
Sbjct: 43 tactaaatcagcgacaattaatatgactcggagggagta 5
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 1 tactccctccgatccatattatttgccgctgatttagt 38
|||||||||||| ||||||| ||| ||||||||||||
Sbjct: 5 tactccctccgagtcatattaattgtcgctgatttagt 42
>RF00906;MIR1122;EU862626.1/121-201 112516:Hordeum marinum subsp.
marinum
Length = 81
Score = 56.0 bits (28), Expect = 7e-08
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 51 taaatcagcgacaactaatatggataggagggagta 86
|||||||||||||| |||||||||| ||||||||||
Sbjct: 40 taaatcagcgacaattaatatggattggagggagta 5
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 59 cgacaactaatatggataggagggagta 86
||||||||||||||||| ||||||||||
Sbjct: 94 cgacaactaatatggatcggagggagta 121
>RF00906;MIR1122;EF560592.1/17009-17118 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 110
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 actttgtactaaatcagcgaca 63
||||||||||||||||||||||
Sbjct: 62 actttgtactaaatcagcgaca 83
>RF00906;MIR1122;AF258609.1/6643-6539 37682:Aegilops tauschii
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 1 tactccctccgatccatattatttgccgctgatttagtgcaactttgtactaaa 54
||||||||||| ||||||||| ||| | | | |||||| ||||||||||||||
Sbjct: 5 tactccctccggtccatattacttgtcacagctttagtataactttgtactaaa 58
