miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY083682.1/10279-10145 4498:Avena sativa (oat)
Length = 135
Score = 63.9 bits (32), Expect = 6e-10
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 64 tttgtctagatacgcatgtacctacacactaaaaagcgtctggatacatgcgtatctaga 123
||||||||||| |||||||| ||||||||||||| ||| | |||||||| |||||||||
Sbjct: 37 tttgtctagattcgcatgtatctacacactaaaacacgt-ttgatacatgtgtatctaga 95
Query: 124 caaa 127
||||
Sbjct: 96 caaa 99
>RF00906;MIR1122;AP004342.5/81046-80894 39947:Oryza sativa
Japonica Group
Length = 153
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 tagtactccctccgtcccatagt 51
|||||||||||||||||||||||
Sbjct: 2 tagtactccctccgtcccatagt 24
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 90 cactaaaaagcgtctggatacatgcgtatctagacaaa 127
|||||||| | |||| ||||||| ||||||||||||||
Sbjct: 62 cactaaaatgagtctagatacatccgtatctagacaaa 99
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 90 cactaaaaagcgtctggatacatgcgtatctagacaaa 127
|||||||| | |||| ||||||| ||||||||||||||
Sbjct: 74 cactaaaatgagtctagatacatccgtatctagacaaa 37
>RF00906;MIR1122;AAAA02018390.1/16986-17138 39946:Oryza sativa
Indica Group
Length = 153
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 ctagtactccctccgtcccata 49
||||||||||||||||||||||
Sbjct: 1 ctagtactccctccgtcccata 22
>RF00906;MIR1122;AACV01013196.1/2181-2029 39947:Oryza sativa
Japonica Group
Length = 153
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 28 ctagtactccctccgtcccata 49
||||||||||||||||||||||
Sbjct: 153 ctagtactccctccgtcccata 132
>RF00906;MIR1122;AACV01010673.1/7331-7451 39947:Oryza sativa
Japonica Group
Length = 121
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 28 ctagtactccctccgtcccata 49
||||||||||||||||||||||
Sbjct: 121 ctagtactccctccgtcccata 100
>RF00906;MIR1122;AAAA02015085.1/16920-17040 39946:Oryza sativa
Indica Group
Length = 121
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 ctagtactccctccgtcccata 49
||||||||||||||||||||||
Sbjct: 1 ctagtactccctccgtcccata 22
