miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AP004043.3/15829-15652 39947:Oryza sativa Japonica
Group
Length = 178
Score = 77.8 bits (39), Expect = 4e-14
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 3 ggccatgctctccacaggctttcttgaactgtgaactcg 41
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggccatgctctccacaggctttcttgaactgtgaactcg 39
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 93 cttgttcatggttcaagaaagtccttggaaaacatg 128
|||||| || ||||||||||||||||||||||||||
Sbjct: 139 cttgttgatagttcaagaaagtccttggaaaacatg 174
>RF00648;MIR396;ABXC01003010.1/105635-105521 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 71.9 bits (36), Expect = 3e-12
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 3 ggccatgctctccacaggctttcttgaactgtgaactcgcgcgcgtgc 50
||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 ggccatgttctccacaggctttcttgaactgtgaactcgatcgcgtgc 48
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 95 tgttcatggttcaagaaagtccttggaaaacatg 128
|||| |||||||||||||||||||||||||||||
Sbjct: 78 tgttgatggttcaagaaagtccttggaaaacatg 111
>RF00648;MIR396;EU950590.1/116-359 4577:Zea mays
Length = 244
Score = 63.9 bits (32), Expect = 7e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 6 catgctctccacaggctttcttgaactgtgaactcg 41
|||||| |||||||||||||||||||||||||||||
Sbjct: 4 catgctttccacaggctttcttgaactgtgaactcg 39
>RF00648;MIR396;ABXC01004473.1/64146-64350 4558:Sorghum bicolor
(sorghum)
Length = 205
Score = 63.9 bits (32), Expect = 7e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 6 catgctctccacaggctttcttgaactgtgaactcg 41
|||||| |||||||||||||||||||||||||||||
Sbjct: 4 catgctttccacaggctttcttgaactgtgaactcg 39
>RF00648;MIR396;AL732351.2/3841-4022 4530:Oryza sativa (rice)
Length = 182
Score = 63.9 bits (32), Expect = 7e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 6 catgctctccacaggctttcttgaactgtgaactcg 41
|||||| |||||||||||||||||||||||||||||
Sbjct: 4 catgctttccacaggctttcttgaactgtgaactcg 39
>RF00648;MIR396;AC226038.1/95545-95657 4641:Musa acuminata
Length = 113
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 6 catgctctccacaggctttcttgaactgtgaact 39
|||| |||||||||||||||||||||||||||||
Sbjct: 4 catgttctccacaggctttcttgaactgtgaact 37
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 103 gttcaagaaagtccttggaaaacatg 128
||||||||||||||||||||||||||
Sbjct: 84 gttcaagaaagtccttggaaaacatg 109
