miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AJ300144.1/1569-1477 4513:Hordeum vulgare
Length = 93
Score = 109 bits (55), Expect = 5e-24
Identities = 76/83 (91%)
Strand = Plus / Minus
Query: 1 actccctctgttcctaaatacttgttgttggggagaactagactagttttctgcaacaac 60
||||||||||||||||||||||||||||||||| |||||||| ||||| || |||||||
Sbjct: 88 actccctctgttcctaaatacttgttgttggggggaactagattagttctccccaacaac 29
Query: 61 aagtattgtggtacggagggagt 83
||||||||||| || ||||||||
Sbjct: 28 aagtattgtggcacagagggagt 6
Score = 61.9 bits (31), Expect = 1e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 1 actccctctgttcctaaatacttgttgttggggagaactagactagttttctgcaacaac 60
||||||||||| || |||||||||||||||||||||||| |||||| | |||||||
Sbjct: 6 actccctctgtgccacaatacttgttgttggggagaactaatctagttccccccaacaac 65
Query: 61 aagtatt 67
|||||||
Sbjct: 66 aagtatt 72
>RF00906;MIR1122;EU282260.1/1308-1219 97361:Hordeum murinum
Length = 90
Score = 95.6 bits (48), Expect = 8e-20
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 1 actccctctgttcctaaatacttgttgttggggagaactagactagtt 48
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 actccctctgttcctaaatacttgttgttggggagaactagactagtt 53
Score = 60.0 bits (30), Expect = 5e-09
Identities = 56/64 (87%), Gaps = 3/64 (4%)
Strand = Plus / Minus
Query: 4 ccctctgttcctaaatacttgttgttggggagaactagactagttttctgcaacaacaag 63
||||||||||||||||||||||| ||||||||||| |||||| || ||||||||||
Sbjct: 82 ccctctgttcctaaatacttgtta---gggagaactagtctagttctccccaacaacaag 26
Query: 64 tatt 67
||||
Sbjct: 25 tatt 22
>RF00906;MIR1122;AK248235.1/1048-956 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 69.9 bits (35), Expect = 5e-12
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 1 actccctctgttcctaaatacttgttgttggggagaactagactagttttctgcaacaac 60
|||||||||||||||||||| ||||||||| ||||||| |||||| ||| |||||||
Sbjct: 6 actccctctgttcctaaatatttgttgttgaagagaactgatctagttctctccaacaac 65
Query: 61 aagtattgtggtacggagg 79
|| |||| |||||| ||||
Sbjct: 66 aaatattatggtacagagg 84
>RF00906;MIR1122;EU730901.1/155966-155873 15368:Brachypodium
distachyon
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 actccctctgttcctaaatacttgttgttg 30
|||||||| |||||||||||||||| ||||
Sbjct: 6 actccctccgttcctaaatacttgtcgttg 35
