miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;ABXC01004937.1/5197-5315 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 79.8 bits (40), Expect = 1e-14
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacacagcggccagactgcatcgatct 47
||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacagcgggcagactgcatcgatct 45
Score = 79.8 bits (40), Expect = 1e-14
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 133 aatgatgatgatgatacagctgccgctgcgtgctcacttctctttctgtcag 184
||||||||||||||| ||||||| ||||||||||||||||||| ||||||||
Sbjct: 68 aatgatgatgatgatgcagctgctgctgcgtgctcacttctctctctgtcag 119
>RF00073;mir-156;AP005429.3/80050-80161 39947:Oryza sativa
Japonica Group
Length = 112
Score = 69.9 bits (35), Expect = 1e-11
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacacagcggccagactgcatc 42
||||||||||||||||||||||||||| |||||||||||
Sbjct: 2 tgacagaagagagtgagcacacagcgggcagactgcatc 40
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 153 tgccgctgcgtgctcacttctctttctgtcag 184
||||| ||||||||||||||||| ||||||||
Sbjct: 81 tgccgttgcgtgctcacttctctctctgtcag 112
>RF00073;mir-156;AAAA02027469.1/16633-16520 39946:Oryza sativa
Indica Group
Length = 114
Score = 69.9 bits (35), Expect = 1e-11
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacacagcggccagactgcatc 42
||||||||||||||||||||||||||| |||||||||||
Sbjct: 2 tgacagaagagagtgagcacacagcgggcagactgcatc 40
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 153 tgccgctgcgtgctcacttctctttctgtcag 184
||||| ||||||||||||||||| ||||||||
Sbjct: 83 tgccgttgcgtgctcacttctctctctgtcag 114
>RF00073;mir-156;EU957877.1/286-402 4577:Zea mays
Length = 117
Score = 61.9 bits (31), Expect = 3e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacacagcggccagactgcatc 42
|||||||||||||||||||| || |||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacgcatcggccagactgcatc 40
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 149 cagctgccgctgcgtgctcacttctctttctgtcag 184
||||||| | ||||||||||||||||||||||||||
Sbjct: 82 cagctgctgttgcgtgctcacttctctttctgtcag 117
>RF00073;mir-156;ABXC01001399.1/20364-20487 4558:Sorghum bicolor
(sorghum)
Length = 124
Score = 61.9 bits (31), Expect = 3e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacacagcggccagactgcatc 42
|||||||||||||||||||| || |||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacgcatcggccagactgcatc 40
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 149 cagctgccgctgcgtgctcacttctctttctgtcag 184
||||||| | ||||||||||||||||||||||||||
Sbjct: 89 cagctgctgttgcgtgctcacttctctttctgtcag 124
>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
(papaya)
Length = 82
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 159 tgcgtgctcacttctctttctgtcag 184
||||||||||||||||||||||||||
Sbjct: 57 tgcgtgctcacttctctttctgtcag 82
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacac 25
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;ABIM01019325.1/182-263 3649:Carica papaya
(papaya)
Length = 82
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 ttgacagaagagagtgagcacacag 27
|||||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacacag 25
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 159 tgcgtgctcacttctctttctgtca 183
|||||||||||||||||||||||||
Sbjct: 57 tgcgtgctcacttctctttctgtca 81
>RF00073;mir-156;AASG02001561.1/34616-34535 3988:Ricinus communis
(castor bean)
Length = 82
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 ttgacagaagagagtgagcacacag 27
|||||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacacag 25
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 159 tgcgtgctcacttctctttctgtca 183
|||||||||||||||||||||||||
Sbjct: 57 tgcgtgctcacttctctttctgtca 81
>RF00073;mir-156;AC159537.24/87146-87063 3880:Medicago truncatula
(barrel medic)
Length = 84
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 159 tgcgtgctcacttctctttctgtca 183
|||||||||||||||||||||||||
Sbjct: 59 tgcgtgctcacttctctttctgtca 83
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 ttgacagaagagagtgagcaca 24
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 160 gcgtgctcacttctctttctgtcag 184
|||||||||||||||||||||||||
Sbjct: 62 gcgtgctcacttctctttctgtcag 86
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 ttgacagaagagagtgagcacac 25
|||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacac 23
>RF00073;mir-156;AL391222.1/7873-7786 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 ttgacagaagagagtgagcacaca 26
||||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacaca 24
>RF00073;mir-156;AARH01003139.1/114039-113955 3694:Populus
trichocarpa
Length = 85
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacacag 27
||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacag 25
>RF00073;mir-156;AM449200.1/5253-5335 29760:Vitis vinifera
Length = 83
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 153 tgccgctgcgtgctcacttctctttctgtcag 184
||||| ||||||||||| ||||||||||||||
Sbjct: 52 tgccggtgcgtgctcacctctctttctgtcag 83
>RF00073;mir-156;AM456699.2/13257-13176 29760:Vitis vinifera
Length = 82
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacacag 27
||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacag 25
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 159 tgcgtgctcacttctctttctgtcag 184
|||||||||| |||||||||||||||
Sbjct: 57 tgcgtgctcatttctctttctgtcag 82
>RF00073;mir-156;ABXC01001718.1/172900-172815 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 ttgacagaagagagtgagcacaca 26
||||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacaca 24
>RF00073;mir-156;EU548379.1/158-255 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacaca 26
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;EU548405.1/118-209 3702:Arabidopsis thaliana
(thale cress)
Length = 92
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacaca 26
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;EU548281.1/284-201 3702:Arabidopsis thaliana
(thale cress)
Length = 84
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacaca 26
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 159 tgcgtgctcacttctctttctgtcag 184
|||||||||||| |||||||||||||
Sbjct: 59 tgcgtgctcactgctctttctgtcag 84
>RF00073;mir-156;AARH01007531.1/19950-19866 3694:Populus
trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacaca 26
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AARH01003087.1/284432-284516 3694:Populus
trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacaca 26
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AASG02007740.1/7202-7285 3988:Ricinus communis
(castor bean)
Length = 84
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacaca 26
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AASG02002418.1/21340-21254 3988:Ricinus communis
(castor bean)
Length = 87
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacaca 26
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AC152551.33/14978-14893 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacaca 26
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AP010362.1/32796-32877 34305:Lotus japonicus
Length = 82
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacaca 26
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AP010300.1/44116-44196 34305:Lotus japonicus
Length = 81
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 ttgacagaagagagtgagcacac 25
|||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacac 23
>RF00073;mir-156;AP009515.1/86721-86633 4081:Solanum lycopersicum
Length = 89
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacaca 26
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AM455203.2/879-962 29760:Vitis vinifera
Length = 84
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacaca 26
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
grass)
Length = 103
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacaca 26
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AACV01011046.1/23142-23062 39947:Oryza sativa
Japonica Group
Length = 81
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 162 gtgctcacttctctttctgtcag 184
|||||||||||||||||||||||
Sbjct: 59 gtgctcacttctctttctgtcag 81
>RF00073;mir-156;AK073452.1/342-427 39947:Oryza sativa Japonica
Group
Length = 86
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 ttgacagaagagagtgagcacac 25
|||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacac 23
>RF00073;mir-156;CU406049.1/183-270 4529:Oryza rufipogon
Length = 88
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 ttgacagaagagagtgagcacac 25
|||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacac 23
>RF00073;mir-156;AY551212.1/74-153 4530:Oryza sativa (rice)
Length = 80
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 162 gtgctcacttctctttctgtcag 184
|||||||||||||||||||||||
Sbjct: 58 gtgctcacttctctttctgtcag 80
>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
Length = 93
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacaca 26
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;EU004275.2/501-588 39946:Oryza sativa Indica
Group
Length = 88
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacaca 26
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;EU548312.1/193-274 3702:Arabidopsis thaliana (thale
cress)
Length = 82
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 159 tgcgtgctcacttctctttctgtcag 184
||||||||||| ||||||||||||||
Sbjct: 57 tgcgtgctcacctctctttctgtcag 82
>RF00073;mir-156;AC005917.3/7348-7264 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 gacagaagagagtgagcacaca 26
||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacaca 24
>RF00073;mir-156;AASG02015394.1/3647-3565 3988:Ricinus communis
(castor bean)
Length = 83
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacac 25
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 159 tgcgtgctcacttctctttctgtcag 184
||||||||||| ||||||||||||||
Sbjct: 58 tgcgtgctcacctctctttctgtcag 83
>RF00073;mir-156;EF692358.1/99-183 3899:Trifolium repens (white
clover)
Length = 85
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 ttgacagaagagagtgagcaca 24
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;CU019603.9/39808-39728 3880:Medicago truncatula
(barrel medic)
Length = 81
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 ttgacagaagagagtgagcaca 24
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;ABXC01004344.1/59682-59592 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacac 25
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;ABXC01002848.1/26684-26598 4558:Sorghum bicolor
(sorghum)
Length = 87
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacac 25
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;ABXC01006854.1/140253-140338 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 155 ccgctgcgtgctcacttctctttctgtcag 184
|||| |||||||| ||||||||||||||||
Sbjct: 57 ccgccgcgtgctcgcttctctttctgtcag 86
>RF00073;mir-156;AAAA02006911.1/103-14 39946:Oryza sativa Indica
Group
Length = 90
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacac 25
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AP005286.3/98217-98130 39947:Oryza sativa
Japonica Group
Length = 88
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacac 25
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AP003332.4/36088-35998 39947:Oryza sativa
Japonica Group
Length = 91
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 tgacagaagagagtgagcacac 25
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
