miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;AACV01011046.1/23142-23062 39947:Oryza sativa
Japonica Group
Length = 81
Score = 87.7 bits (44), Expect = 4e-17
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 104 ttcatgtgcttgaagctatatgtgctcacttctctttctgtcag 147
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 ttcatgtgcttgaagctatatgtgctcacttctctttctgtcag 81
>RF00073;mir-156;AY551212.1/74-153 4530:Oryza sativa (rice)
Length = 80
Score = 87.7 bits (44), Expect = 4e-17
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 104 ttcatgtgcttgaagctatatgtgctcacttctctttctgtcag 147
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37 ttcatgtgcttgaagctatatgtgctcacttctctttctgtcag 80
>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
grass)
Length = 103
Score = 60.0 bits (30), Expect = 9e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 110 tgcttgaagctatatgtgctcacttctctttctgtcag 147
||||||||||||| ||||||||||||||| ||||||||
Sbjct: 66 tgcttgaagctatgtgtgctcacttctctctctgtcag 103
>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
Length = 93
Score = 60.0 bits (30), Expect = 9e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 110 tgcttgaagctatatgtgctcacttctctttctgtcag 147
||||||||||||| ||||||||||||||| ||||||||
Sbjct: 56 tgcttgaagctatgtgtgctcacttctctctctgtcag 93
>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
Length = 88
Score = 50.1 bits (25), Expect = 9e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 110 tgcttgaagctatatgtgctcacttctctttctgtca 146
||||||||||||| |||||||||||||| |||||||
Sbjct: 51 tgcttgaagctatgcgtgctcacttctctatctgtca 87
>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
(papaya)
Length = 82
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 125 gtgctcacttctctttctgtcag 147
|||||||||||||||||||||||
Sbjct: 60 gtgctcacttctctttctgtcag 82
>RF00073;mir-156;EU957877.1/286-402 4577:Zea mays
Length = 117
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 125 gtgctcacttctctttctgtcag 147
|||||||||||||||||||||||
Sbjct: 95 gtgctcacttctctttctgtcag 117
>RF00073;mir-156;ABXC01001399.1/20364-20487 4558:Sorghum bicolor
(sorghum)
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 125 gtgctcacttctctttctgtcag 147
|||||||||||||||||||||||
Sbjct: 102 gtgctcacttctctttctgtcag 124
>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 125 gtgctcacttctctttctgtcag 147
|||||||||||||||||||||||
Sbjct: 64 gtgctcacttctctttctgtcag 86
>RF00073;mir-156;ABIM01019325.1/182-263 3649:Carica papaya (papaya)
Length = 82
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 125 gtgctcacttctctttctgtca 146
||||||||||||||||||||||
Sbjct: 60 gtgctcacttctctttctgtca 81
>RF00073;mir-156;AASG02001561.1/34616-34535 3988:Ricinus communis
(castor bean)
Length = 82
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 125 gtgctcacttctctttctgtca 146
||||||||||||||||||||||
Sbjct: 60 gtgctcacttctctttctgtca 81
>RF00073;mir-156;AC159537.24/87146-87063 3880:Medicago truncatula
(barrel medic)
Length = 84
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 125 gtgctcacttctctttctgtca 146
||||||||||||||||||||||
Sbjct: 62 gtgctcacttctctttctgtca 83
