miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 539 bits (272), Expect = e-153
Identities = 272/272 (100%)
Strand = Plus / Plus
Query: 1 gttgtggacgttgagctcctttcggtccaaaaaggggtgttgctgtgggtcgattgagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttgtggacgttgagctcctttcggtccaaaaaggggtgttgctgtgggtcgattgagct 60
Query: 61 gctgggtcatggatcccgttagcctactccatgttcatcattcagctcgagatctgaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctgggtcatggatcccgttagcctactccatgttcatcattcagctcgagatctgaaag 120
Query: 121 aaactactccaatttatactaatagtatgtgtgtagataggaaaatgatggagtactcgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaactactccaatttatactaatagtatgtgtgtagataggaaaatgatggagtactcgt 180
Query: 181 tgttgggataggcttatggcttgcatgccccaggagctgcatcaaccctacatggaccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgttgggataggcttatggcttgcatgccccaggagctgcatcaaccctacatggaccct 240
Query: 241 ctttggattgaagggagctctgcatcttttgt 272
||||||||||||||||||||||||||||||||
Sbjct: 241 ctttggattgaagggagctctgcatcttttgt 272
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 60.0 bits (30), Expect = 2e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 239 ctctttggattgaagggagctctgcatctt 268
||||||||||||||||||||||||||||||
Sbjct: 152 ctctttggattgaagggagctctgcatctt 181
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 56.0 bits (28), Expect = 3e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 239 ctctttggattgaagggagctctgcatc 266
||||||||||||||||||||||||||||
Sbjct: 198 ctctttggattgaagggagctctgcatc 225
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 56.0 bits (28), Expect = 3e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 239 ctctttggattgaagggagctctgcatc 266
||||||||||||||||||||||||||||
Sbjct: 209 ctctttggattgaagggagctctgcatc 236
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 240 tctttggattgaagggagctctgcatctt 268
|||||||||||||||||||||| ||||||
Sbjct: 170 tctttggattgaagggagctctacatctt 198
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 240 tctttggattgaagggagctctgcatct 267
|||||||||||||||||||||| |||||
Sbjct: 174 tctttggattgaagggagctcttcatct 201
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 242 tttggattgaagggagctctgcatctt 268
|||||| ||||||||||||||||||||
Sbjct: 190 tttggagtgaagggagctctgcatctt 216
