miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 313 bits (158), Expect = 5e-85
Identities = 179/182 (98%), Gaps = 3/182 (1%)
Strand = Plus / Plus
Query: 7 gaagtggagctcctttcgttccaatgaaaggtttatctgaagggtgatacagctgcttgt 66
||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 7 gaagtggagctcctt-cgt-ccaatgaaaggtt-atctgaagggtgatacagctgcttgt 63
Query: 67 tcatggttcccactattctatctcataggaaaagagataggcttgtggtttgcatgacca 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 tcatggttcccactattctatctcataggaaaagagataggcttgtggtttgcatgacca 123
Query: 127 aggagccgaatcaactccttgctgaccactctttggattgaagggagctctgcatcttga 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aggagccgaatcaactccttgctgaccactctttggattgaagggagctctgcatcttga 183
Query: 187 tc 188
||
Sbjct: 184 tc 185
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 97.6 bits (49), Expect = 5e-20
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 100 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 159
|||||||||||||||||||||||||| |||||| | | | | |||||||| || |||||
Sbjct: 143 gagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctt 202
Query: 160 tggattgaagggagctctgcatcttgatc 188
||||||||||||||||||||||| |||||
Sbjct: 203 tggattgaagggagctctgcatcctgatc 231
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 58 gctgcttgttcatggttcccactattctatctcat 92
|||||| |||||||||||||||||| |||||||||
Sbjct: 59 gctgctcgttcatggttcccactatcctatctcat 93
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 97.6 bits (49), Expect = 5e-20
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 100 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 159
|||||||||||||||||||||||||| |||||| | | | | |||||||| || |||||
Sbjct: 154 gagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 213
Query: 160 tggattgaagggagctctgcatcttgatc 188
||||||||||||||||||||||| |||||
Sbjct: 214 tggattgaagggagctctgcatcctgatc 242
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 58 gctgcttgttcatggttcccactattctatctcat 92
|||||| |||||||||||||||||| |||||||||
Sbjct: 58 gctgctcgttcatggttcccactatcctatctcat 92
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 61.9 bits (31), Expect = 3e-09
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 100 gagataggcttgtggtttgcatgaccaaggagccgaatcaactcctt-gctgaccactct 158
||||| |||||||||||||||||||| |||||| | || | |||| | ||||| || |
Sbjct: 131 gagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgctgt 190
Query: 159 ttggattgaagggagctctgcatcttg 185
||||| |||||||||||||||||||||
Sbjct: 191 ttggagtgaagggagctctgcatcttg 217
Score = 56.0 bits (28), Expect = 2e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 41 atctgaagggtgatacagctgcttgttcatggttcccact 80
|||||| ||||| |||||||||| ||||||||||||||||
Sbjct: 41 atctgatgggtggtacagctgctcgttcatggttcccact 80
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 155 ctctttggattgaagggagctctgcatctt 184
||||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatctt 268
>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
(sorghum)
Length = 228
Score = 58.0 bits (29), Expect = 5e-08
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 44 tgaagggtgatacagctgcttgttcatggttcccactattctatctcat 92
||||||||||| ||||||| |||||||||||||||||| | |||||||
Sbjct: 44 tgaagggtgatcgagctgctcgttcatggttcccactatcccatctcat 92
Score = 52.0 bits (26), Expect = 3e-06
Identities = 72/86 (83%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 100 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgct-gaccactct 158
||||| ||| |||||||||||||||| |||||| | ||| | |||| | |||| |||
Sbjct: 137 gagatgggcctgtggtttgcatgaccgaggagctgcatcgtcccctttgtcgaccgctcg 196
Query: 159 ttggattgaagggagctctgcatctt 184
||||||||||||||||||||| ||||
Sbjct: 197 ttggattgaagggagctctgcgtctt 222
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 156 tctttggattgaagggagctctgcatctt 184
|||||||||||||||||||||| ||||||
Sbjct: 170 tctttggattgaagggagctctacatctt 198
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 156 tctttggattgaagggagctctgcatct 183
|||||||||||||||||||||| |||||
Sbjct: 174 tctttggattgaagggagctcttcatct 201
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 158 tttggattgaagggagctctgcatct 183
|||||||||||||||||||| |||||
Sbjct: 162 tttggattgaagggagctctacatct 187
