miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AP008207.1/6555244-6555046 39947:Oryza sativa
Japonica Group
Length = 199
Score = 391 bits (197), Expect = e-108
Identities = 197/197 (100%)
Strand = Plus / Plus
Query: 1 gaggaggaagaggagctcctttcgatccaattcaggagaggaagtggtaggatgcagctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaggaggaagaggagctcctttcgatccaattcaggagaggaagtggtaggatgcagctg 60
Query: 61 ccgattcatggatacctctggagtgcatggcagcaatgctgtaggcctgcacttgcatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccgattcatggatacctctggagtgcatggcagcaatgctgtaggcctgcacttgcatgg 120
Query: 121 gtttgcatgacccgggagatgaacccaccattgtcttcctctattgattggattgaaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtttgcatgacccgggagatgaacccaccattgtcttcctctattgattggattgaaggg 180
Query: 181 agctccacatctctctc 197
|||||||||||||||||
Sbjct: 181 agctccacatctctctc 197
>RF00638;MIR159;EU869143.1/162-369 39946:Oryza sativa Indica Group
Length = 208
Score = 222 bits (112), Expect = 1e-57
Identities = 189/206 (91%), Gaps = 9/206 (4%)
Strand = Plus / Plus
Query: 1 gaggaggaagaggagctcctttcgatccaattcaggagaggaagtggtaggatgcagctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaggaggaagaggagctcctttcgatccaattcaggagaggaagtggtaggatgcagctg 60
Query: 61 ccgattcatggatacctctggagtgcatggcagcaa--tgct-gtaggcc-tgcacttgc 116
|||||||||||||||||||||||||| ||||||||| ||| | ||||| |||||||||
Sbjct: 61 ccgattcatggatacctctggagtgcgtggcagcaaatggctggaaggccgtgcacttgc 120
Query: 117 a-tgggtttgcat-gacccggg-agatgaacccacca--ttgtcttcctctattgattgg 171
| ||||||||||| |||||||| | || |||| |||| | |||| ||||||||||||||
Sbjct: 121 attgggtttgcatagacccgggaaaataaaccaaccaattggtctccctctattgattgg 180
Query: 172 attgaagggagctccacatctctctc 197
||||||||||||||||||||||||||
Sbjct: 181 attgaagggagctccacatctctctc 206
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 220 bits (111), Expect = 6e-57
Identities = 170/191 (89%), Gaps = 9/191 (4%)
Strand = Plus / Plus
Query: 7 gaagaggagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgatt 66
||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 7 gaagacgagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggtt 66
Query: 67 catggatacctctggagtgcatggcagcaatgctgtaggcctgcacttgcatgggtttgc 126
|||||||||||||| |||||||| | |||||| |||||||||||||||||||
Sbjct: 67 catggatacctctgcagtgcatgtc---------gtaggcttgcacttgcatgggtttgc 117
Query: 127 atgacccgggagatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 118 atgacccgggagatgaacccaccattgtcttcctcttatgcttggattgaagggagctct 177
Query: 187 acatctctctc 197
||| |||||||
Sbjct: 178 acacctctctc 188
>RF00638;MIR159;EU869145.1/283-93 39946:Oryza sativa Indica Group
Length = 191
Score = 214 bits (108), Expect = 3e-55
Identities = 159/177 (89%), Gaps = 8/177 (4%)
Strand = Plus / Plus
Query: 10 gaggagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcat 69
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 10 gaggagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcat 69
Query: 70 ggatacctctggagtgcatggcagcaatgctgtaggcctgcacttgcatgggtttgcatg 129
||||||||||| ||| |||| | | ||||||||||||||||||||||||||||
Sbjct: 70 ggatacctctgcagttcatgccgg--------taggcctgcacttgcatgggtttgcatg 121
Query: 130 acccgggagatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 122 acctgggagatgaacctgccattgtgttcctctattgattggattgaagggagctcc 178
>RF00638;MIR159;EU869146.1/267-75 39946:Oryza sativa Indica Group
Length = 193
Score = 210 bits (106), Expect = 5e-54
Identities = 154/169 (91%), Gaps = 7/169 (4%)
Strand = Plus / Plus
Query: 18 cctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatggatacct 77
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 19 cctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttcatggatacct 78
Query: 78 ctggagtgcatggcagcaatgctgtaggcctgcacttgcatgggtttgcatgacccggga 137
|||||||||| |||| || ||| ||| | ||| |||||||||||||||| |||||
Sbjct: 79 ctggagtgcagggca--aa-----tagtcctaccctttcatgggtttgcatgactcggga 131
Query: 138 gatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 132 gatgaacccgccattgtcttcctctattgattggattgaagggagctcc 180
>RF00638;MIR159;ABXC01001681.1/9004-8807 4558:Sorghum bicolor
(sorghum)
Length = 198
Score = 107 bits (54), Expect = 6e-23
Identities = 145/174 (83%), Gaps = 1/174 (0%)
Strand = Plus / Plus
Query: 13 gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72
||||||| ||||||||||| |||||| ||||||||| || ||||||||||| ||||||||
Sbjct: 13 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 72
Query: 73 tacctctggagtgcatggcagcaatgctgtaggcctgcacttgcatgggtttgcatgacc 132
| ||||| ||||| | | | || || ||||||||||||||||| |||||||||
Sbjct: 73 tgcctctctggtgca-gcaatgactgatgctcacctgcacttgcatgggtgtgcatgacc 131
Query: 133 cgggagatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
||||||||||||||||||| |||| | || || |||||||||||||||||||
Sbjct: 132 cgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcc 185
>RF00638;MIR159;EU968889.1/70-269 4577:Zea mays
Length = 200
Score = 91.7 bits (46), Expect = 3e-18
Identities = 147/178 (82%), Gaps = 7/178 (3%)
Strand = Plus / Plus
Query: 13 gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72
||||||| ||||||||||| |||||| ||||||||| || ||||||||||| ||||||||
Sbjct: 13 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 72
Query: 73 tacctctggagtgc----atggcagcaatgctgtaggcctgcacttgcatgggtttgcat 128
||||||| |||| ||||| || |||| | |||||||||||||||| |||||
Sbjct: 73 tacctctctggtgcagcaatggccgc--tgct-cacctctgcacttgcatgggtgtgcat 129
Query: 129 gacccgggagatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
|||||||||||||| ||| |||| |||| | || || |||||||||||||||||||
Sbjct: 130 gacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctcc 187
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 168 ttggattgaagggagctccacatctctctc 197
|||||||||||||||||| |||||||||||
Sbjct: 163 ttggattgaagggagctctacatctctctc 192
>RF00638;MIR159;ABIM01022236.1/30966-30764 3649:Carica papaya
(papaya)
Length = 203
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 168 ttggattgaagggagctccacat 190
|||||||||||||||||||||||
Sbjct: 172 ttggattgaagggagctccacat 194
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 168 ttggattgaagggagctccacatctctctc 197
|||||||||||||||||| ||| |||||||
Sbjct: 163 ttggattgaagggagctctacacctctctc 192
