miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU869145.1/283-93 39946:Oryza sativa Indica Group
Length = 191
Score = 375 bits (189), Expect = e-103
Identities = 189/189 (100%)
Strand = Plus / Plus
Query: 1 tgatgtgaggaggagctcctttcgatccaattcaggagaggaagtggtgggatgcagctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgatgtgaggaggagctcctttcgatccaattcaggagaggaagtggtgggatgcagctg 60
Query: 61 ccggttcatggatacctctgcagttcatgccggtaggcctgcacttgcatgggtttgcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccggttcatggatacctctgcagttcatgccggtaggcctgcacttgcatgggtttgcat 120
Query: 121 gacctgggagatgaacctgccattgtgttcctctattgattggattgaagggagctccgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gacctgggagatgaacctgccattgtgttcctctattgattggattgaagggagctccgg 180
Query: 181 ctacaccta 189
|||||||||
Sbjct: 181 ctacaccta 189
>RF00638;MIR159;AP008207.1/6555244-6555046 39947:Oryza sativa
Japonica Group
Length = 199
Score = 214 bits (108), Expect = 3e-55
Identities = 159/177 (89%), Gaps = 8/177 (4%)
Strand = Plus / Plus
Query: 10 gaggagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcat 69
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 10 gaggagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcat 69
Query: 70 ggatacctctgcagttcatgccgg--------taggcctgcacttgcatgggtttgcatg 121
||||||||||| ||| |||| | | ||||||||||||||||||||||||||||
Sbjct: 70 ggatacctctggagtgcatggcagcaatgctgtaggcctgcacttgcatgggtttgcatg 129
Query: 122 acctgggagatgaacctgccattgtgttcctctattgattggattgaagggagctcc 178
||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 130 acccgggagatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 208 bits (105), Expect = 2e-53
Identities = 151/165 (91%), Gaps = 1/165 (0%)
Strand = Plus / Plus
Query: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 13 gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72
Query: 73 tacctctgcagttcatgccggtaggcctgcacttgcatgggtttgcatgacctgggagat 132
|||||||||||| |||| | |||||| ||||||||||||||||||||||||| |||||||
Sbjct: 73 tacctctgcagtgcatgtc-gtaggcttgcacttgcatgggtttgcatgacccgggagat 131
Query: 133 gaacctgccattgtgttcctctattgattggattgaagggagctc 177
||||| ||||||| ||||||| || ||||||||||||||||||
Sbjct: 132 gaacccaccattgtcttcctcttatgcttggattgaagggagctc 176
>RF00638;MIR159;EU869146.1/267-75 39946:Oryza sativa Indica Group
Length = 193
Score = 186 bits (94), Expect = 7e-47
Identities = 146/162 (90%), Gaps = 1/162 (0%)
Strand = Plus / Plus
Query: 18 cctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatggatacct 77
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 19 cctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttcatggatacct 78
Query: 78 ctgcagttca-tgccggtaggcctgcacttgcatgggtttgcatgacctgggagatgaac 136
||| ||| || || ||| ||| | ||| |||||||||||||||| |||||||||||
Sbjct: 79 ctggagtgcagggcaaatagtcctaccctttcatgggtttgcatgactcgggagatgaac 138
Query: 137 ctgccattgtgttcctctattgattggattgaagggagctcc 178
| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 139 ccgccattgtcttcctctattgattggattgaagggagctcc 180
>RF00638;MIR159;EU869143.1/162-369 39946:Oryza sativa Indica Group
Length = 208
Score = 125 bits (63), Expect = 2e-28
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 10 gaggagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcat 69
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 10 gaggagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcat 69
Query: 70 ggatacctctg 80
|||||||||||
Sbjct: 70 ggatacctctg 80
>RF00638;MIR159;EU968889.1/70-269 4577:Zea mays
Length = 200
Score = 93.7 bits (47), Expect = 8e-19
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
||||||| ||||||||||| |||||| ||||||||| || ||||||||||||||||||||
Sbjct: 13 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 72
Query: 73 tacctct 79
|||||||
Sbjct: 73 tacctct 79
>RF00638;MIR159;ABXC01001681.1/9004-8807 4558:Sorghum bicolor
(sorghum)
Length = 198
Score = 85.7 bits (43), Expect = 2e-16
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
||||||| ||||||||||| |||||| ||||||||| || ||||||||||||||||||||
Sbjct: 13 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 72
Query: 73 tacctct 79
| |||||
Sbjct: 73 tgcctct 79
