miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU869146.1/267-75 39946:Oryza sativa Indica Group
Length = 193
Score = 379 bits (191), Expect = e-104
Identities = 191/191 (100%)
Strand = Plus / Plus
Query: 1 gatgaagaagaagagctccctttcgatccaattcaggagaggaagtggtaggatgcagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatgaagaagaagagctccctttcgatccaattcaggagaggaagtggtaggatgcagct 60
Query: 61 gccggttcatggatacctctggagtgcagggcaaatagtcctaccctttcatgggtttgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gccggttcatggatacctctggagtgcagggcaaatagtcctaccctttcatgggtttgc 120
Query: 121 atgactcgggagatgaacccgccattgtcttcctctattgattggattgaagggagctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgactcgggagatgaacccgccattgtcttcctctattgattggattgaagggagctcc 180
Query: 181 tctagctacat 191
|||||||||||
Sbjct: 181 tctagctacat 191
>RF00638;MIR159;AP008207.1/6555244-6555046 39947:Oryza sativa
Japonica Group
Length = 199
Score = 210 bits (106), Expect = 5e-54
Identities = 154/169 (91%), Gaps = 7/169 (4%)
Strand = Plus / Plus
Query: 19 cctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttcatggatacct 78
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 18 cctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatggatacct 77
Query: 79 ctggagtgcagggca--aa-----tagtcctaccctttcatgggtttgcatgactcggga 131
|||||||||| |||| || ||| ||| | ||| |||||||||||||||| |||||
Sbjct: 78 ctggagtgcatggcagcaatgctgtaggcctgcacttgcatgggtttgcatgacccggga 137
Query: 132 gatgaacccgccattgtcttcctctattgattggattgaagggagctcc 180
||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 138 gatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
>RF00638;MIR159;EU869145.1/283-93 39946:Oryza sativa Indica Group
Length = 191
Score = 186 bits (94), Expect = 8e-47
Identities = 146/162 (90%), Gaps = 1/162 (0%)
Strand = Plus / Plus
Query: 19 cctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttcatggatacct 78
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 18 cctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatggatacct 77
Query: 79 ctggagtgcagggcaaatagtcctaccctttcatgggtttgcatgactcgggagatgaac 138
||| ||| || || ||| ||| | ||| |||||||||||||||| |||||||||||
Sbjct: 78 ctgcagttca-tgccggtaggcctgcacttgcatgggtttgcatgacctgggagatgaac 136
Query: 139 ccgccattgtcttcctctattgattggattgaagggagctcc 180
| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 137 ctgccattgtgttcctctattgattggattgaagggagctcc 178
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 184 bits (93), Expect = 3e-46
Identities = 157/176 (89%), Gaps = 3/176 (1%)
Strand = Plus / Plus
Query: 4 gaagaagaagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgcc 63
|||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 4 gaagaagacgagctccctt-cgatccaatccaggagaggaagtggtaggatgcagctgcc 62
Query: 64 ggttcatggatacctctggagtgcagggcaaatagtcctaccctttcatgggtttgcatg 123
|||||||||||||||||| |||||| | | ||| | | | ||| ||||||||||||||
Sbjct: 63 ggttcatggatacctctgcagtgcatgtc--gtaggcttgcacttgcatgggtttgcatg 120
Query: 124 actcgggagatgaacccgccattgtcttcctctattgattggattgaagggagctc 179
|| |||||||||||||| ||||||||||||||| || ||||||||||||||||||
Sbjct: 121 acccgggagatgaacccaccattgtcttcctcttatgcttggattgaagggagctc 176
>RF00638;MIR159;EU869143.1/162-369 39946:Oryza sativa Indica Group
Length = 208
Score = 129 bits (65), Expect = 2e-29
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 19 cctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttcatggatacct 78
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 18 cctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatggatacct 77
Query: 79 ctggagtgc 87
|||||||||
Sbjct: 78 ctggagtgc 86
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 147 gtcttcctctattgattggattgaagggagctcc 180
|||| |||||||||||||||||||||||||||||
Sbjct: 162 gtctccctctattgattggattgaagggagctcc 195
>RF00638;MIR159;EU968889.1/70-269 4577:Zea mays
Length = 200
Score = 93.7 bits (47), Expect = 8e-19
Identities = 66/71 (92%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 10 gaagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttca 69
||||||||||||| ||||||||| |||||| ||||||||| || ||||||||||||||||
Sbjct: 10 gaagagctccctt-cgatccaatccaggaggggaagtggtcggttgcagctgccggttca 68
Query: 70 tggatacctct 80
|||||||||||
Sbjct: 69 tggatacctct 79
>RF00638;MIR159;ABXC01001681.1/9004-8807 4558:Sorghum bicolor
(sorghum)
Length = 198
Score = 83.8 bits (42), Expect = 8e-16
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 11 aagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttcat 70
|||||||||||| ||||||||| |||||| ||||||||| || |||||||||||||||||
Sbjct: 11 aagagctccctt-cgatccaatccaggaggggaagtggtcggttgcagctgccggttcat 69
Query: 71 ggatacctct 80
|||| |||||
Sbjct: 70 ggatgcctct 79
>RF00638;MIR159;AASG02000051.1/89024-89224 3988:Ricinus communis
(castor bean)
Length = 201
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 attggattgaagggagctcctc 182
||||||||||||||||||||||
Sbjct: 169 attggattgaagggagctcctc 190
