miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 373 bits (188), Expect = e-103
Identities = 188/188 (100%)
Strand = Plus / Plus
Query: 1 gaagaagaagacgagctcccttcgatccaatccaggagaggaagtggtaggatgcagctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaagaagaagacgagctcccttcgatccaatccaggagaggaagtggtaggatgcagctg 60
Query: 61 ccggttcatggatacctctgcagtgcatgtcgtaggcttgcacttgcatgggtttgcatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccggttcatggatacctctgcagtgcatgtcgtaggcttgcacttgcatgggtttgcatg 120
Query: 121 acccgggagatgaacccaccattgtcttcctcttatgcttggattgaagggagctctaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acccgggagatgaacccaccattgtcttcctcttatgcttggattgaagggagctctaca 180
Query: 181 cctctctc 188
||||||||
Sbjct: 181 cctctctc 188
>RF00638;MIR159;AP008207.1/6555244-6555046 39947:Oryza sativa
Japonica Group
Length = 199
Score = 220 bits (111), Expect = 5e-57
Identities = 170/191 (89%), Gaps = 9/191 (4%)
Strand = Plus / Plus
Query: 7 gaagacgagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggtt 66
||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 7 gaagaggagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgatt 66
Query: 67 catggatacctctgcagtgcatgtc---------gtaggcttgcacttgcatgggtttgc 117
|||||||||||||| |||||||| | |||||| |||||||||||||||||||
Sbjct: 67 catggatacctctggagtgcatggcagcaatgctgtaggcctgcacttgcatgggtttgc 126
Query: 118 atgacccgggagatgaacccaccattgtcttcctcttatgcttggattgaagggagctct 177
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 127 atgacccgggagatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
Query: 178 acacctctctc 188
||| |||||||
Sbjct: 187 acatctctctc 197
>RF00638;MIR159;EU869145.1/283-93 39946:Oryza sativa Indica Group
Length = 191
Score = 208 bits (105), Expect = 2e-53
Identities = 151/165 (91%), Gaps = 1/165 (0%)
Strand = Plus / Plus
Query: 13 gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72
||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
Query: 73 tacctctgcagtgcatgtc-gtaggcttgcacttgcatgggtttgcatgacccgggagat 131
|||||||||||| |||| | |||||| ||||||||||||||||||||||||| |||||||
Sbjct: 73 tacctctgcagttcatgccggtaggcctgcacttgcatgggtttgcatgacctgggagat 132
Query: 132 gaacccaccattgtcttcctcttatgcttggattgaagggagctc 176
||||| ||||||| ||||||| || ||||||||||||||||||
Sbjct: 133 gaacctgccattgtgttcctctattgattggattgaagggagctc 177
>RF00638;MIR159;EU869146.1/267-75 39946:Oryza sativa Indica Group
Length = 193
Score = 184 bits (93), Expect = 3e-46
Identities = 157/176 (89%), Gaps = 3/176 (1%)
Strand = Plus / Plus
Query: 4 gaagaagacgagctccctt-cgatccaatccaggagaggaagtggtaggatgcagctgcc 62
|||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 4 gaagaagaagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgcc 63
Query: 63 ggttcatggatacctctgcagtgcatgtc--gtaggcttgcacttgcatgggtttgcatg 120
|||||||||||||||||| |||||| | | ||| | | | ||| ||||||||||||||
Sbjct: 64 ggttcatggatacctctggagtgcagggcaaatagtcctaccctttcatgggtttgcatg 123
Query: 121 acccgggagatgaacccaccattgtcttcctcttatgcttggattgaagggagctc 176
|| |||||||||||||| ||||||||||||||| || ||||||||||||||||||
Sbjct: 124 actcgggagatgaacccgccattgtcttcctctattgattggattgaagggagctc 179
>RF00638;MIR159;ABXC01001681.1/9004-8807 4558:Sorghum bicolor
(sorghum)
Length = 198
Score = 131 bits (66), Expect = 4e-30
Identities = 146/172 (84%), Gaps = 8/172 (4%)
Strand = Plus / Plus
Query: 13 gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72
|||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 13 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 72
Query: 73 tacctctgcagtgc----atgtcgtaggct----tgcacttgcatgggtttgcatgaccc 124
| ||||| |||| ||| | | ||| ||||||||||||||| ||||||||||
Sbjct: 73 tgcctctctggtgcagcaatgactgatgctcacctgcacttgcatgggtgtgcatgaccc 132
Query: 125 gggagatgaacccaccattgtcttcctcttatgcttggattgaagggagctc 176
|||||||||||||||||| |||| | || |||||||||||||||||||||
Sbjct: 133 gggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 184
>RF00638;MIR159;EU869143.1/162-369 39946:Oryza sativa Indica Group
Length = 208
Score = 119 bits (60), Expect = 1e-26
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 7 gaagacgagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggtt 66
||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 7 gaagaggagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgatt 66
Query: 67 catggatacctctgcagtgc 86
|||||||||||||| |||||
Sbjct: 67 catggatacctctggagtgc 86
>RF00638;MIR159;EU968889.1/70-269 4577:Zea mays
Length = 200
Score = 109 bits (55), Expect = 1e-23
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 13 gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72
|||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 13 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 72
Query: 73 tacctct 79
|||||||
Sbjct: 73 tacctct 79
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 159 ttggattgaagggagctctacacctctctc 188
||||||||||||||||||||||||||||||
Sbjct: 163 ttggattgaagggagctctacacctctctc 192
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 159 ttggattgaagggagctctacacctc 184
||||||||||||||||||||||||||
Sbjct: 163 ttggattgaagggagctctacacctc 188
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 159 ttggattgaagggagctctacacctctctc 188
|||||||||||||||||||||| |||||||
Sbjct: 163 ttggattgaagggagctctacatctctctc 192
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 ttggattgaagggagctctaca 180
||||||||||||||||||||||
Sbjct: 173 ttggattgaagggagctctaca 194
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 159 ttggattgaagggagctctaca 180
||||||||||||||||||||||
Sbjct: 169 ttggattgaagggagctctaca 190
