miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
Indica Group
Length = 136
Score = 270 bits (136), Expect = 5e-72
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 5 atatgcctggctccctgtatgccactcgcgtagctgccaaactcagttgaaacaactgcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgccactcgcgtagctgccaaactcagttgaaacaactgcc 60
Query: 65 ttctcccggcgagattcaggcattgtgttcgtacgtttggctctactgcggatggcgtgc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttctcccggcgagattcaggcattgtgttcgtacgtttggctctactgcggatggcgtgc 120
Query: 125 gaggagccaagcatga 140
||||||||||||||||
Sbjct: 121 gaggagccaagcatga 136
>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 79.8 bits (40), Expect = 9e-15
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 101 ttggctctactgcggatggcgtgcgaggagccaagcatga 140
||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 ttggctctactgcggatggcgtgcgaggagccaagcatga 106
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 5 atatgcctggctccctgtatgccactcgcgtagctgccaa 44
||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 atatgcctggctccctgtatgccactcgcttagctgccaa 40
>RF00247;mir-160;EU970393.1/2-98 4577:Zea mays
Length = 97
Score = 60.0 bits (30), Expect = 8e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 101 ttggctctactgcggatggcgtgcgaggagccaa 134
||||||| ||||||||||||||||||||||||||
Sbjct: 64 ttggctccactgcggatggcgtgcgaggagccaa 97
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 11 ctggctccctgtatgccactcgcgtagctgccaa 44
||||||||||||||||||||||| | ||||||||
Sbjct: 1 ctggctccctgtatgccactcgcatggctgccaa 34
>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
Length = 85
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 atatgcctggctccctgtatgccactcgc 33
|||||||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgccactcgc 29
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 110 ctgcggatggcgtgcgaggagccaagcatg 139
|||||| |||||||||||| ||||||||||
Sbjct: 55 ctgcggctggcgtgcgaggtgccaagcatg 84
>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 atatgcctggctccctgtatgccactcgc 33
|||||||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgccactcgc 29
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 110 ctgcggatggcgtgcgaggagccaagcatg 139
|||||| |||||||||||| ||||||||||
Sbjct: 71 ctgcggctggcgtgcgaggtgccaagcatg 100
>RF00247;mir-160;AY551220.1/23-122 4530:Oryza sativa (rice)
Length = 100
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 5 atatgcctggctccctgtatgccactcgcgtagctgccaa 44
||||||||||||||||||||||| ||||| | ||||||||
Sbjct: 1 atatgcctggctccctgtatgccgctcgcatggctgccaa 40
>RF00247;mir-160;DQ455766.1/101-12 169985:Oenocarpus bataua
Length = 90
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 106 tctactgcggatggcgtgcgaggagccaagcat 138
||||| |||| ||||||||||||||||||||||
Sbjct: 56 tctacggcgggtggcgtgcgaggagccaagcat 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccact 30
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccact 26
>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
(papaya)
Length = 88
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tatgcctggctccctgtatgccac 29
||||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgccac 25
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 117 tggcgtgcgaggagccaagcatg 139
|||||||||||||||||||||||
Sbjct: 65 tggcgtgcgaggagccaagcatg 87
>RF00247;mir-160;EU548646.1/366-280 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tatgcctggctccctgtatgccac 29
||||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgccac 25
>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
trichocarpa
Length = 90
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tatgcctggctccctgtatgccac 29
||||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgccac 25
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 117 tggcgtgcgaggagccaagcat 138
||||||||||||||||||||||
Sbjct: 67 tggcgtgcgaggagccaagcat 88
>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
Length = 89
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tatgcctggctccctgtatgccac 29
||||||||||||||||||||||||
Sbjct: 1 tatgcctggctccctgtatgccac 24
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 117 tggcgtgcgaggagccaagcat 138
||||||||||||||||||||||
Sbjct: 67 tggcgtgcgaggagccaagcat 88
>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
(castor bean)
Length = 90
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tatgcctggctccctgtatgccac 29
||||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgccac 25
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 117 tggcgtgcgaggagccaagcat 138
||||||||||||||||||||||
Sbjct: 67 tggcgtgcgaggagccaagcat 88
>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
Length = 89
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 atatgcctggctccctgtatgcca 28
||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcca 24
>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
Length = 86
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 112 gcggatggcgtgcgaggagccaagcatg 139
|||||||||||||||||||||| |||||
Sbjct: 58 gcggatggcgtgcgaggagccatgcatg 85
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 atgcctggctccctgtatgcca 28
||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgcca 24
>RF00247;mir-160;CAAP02006197.1/486-575 29760:Vitis vinifera
Length = 90
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 111 tgcggatggcgtgcgaggagccaagcat 138
||||| ||||||||||||||||||||||
Sbjct: 61 tgcgggtggcgtgcgaggagccaagcat 88
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccac 29
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
Length = 86
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 atatgcctggctccctgtatgcca 28
||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcca 24
>RF00247;mir-160;ABXC01004530.1/55208-55296 4558:Sorghum bicolor
(sorghum)
Length = 89
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccactc 31
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccactc 27
>RF00247;mir-160;EU798771.1/193-98 58934:Zizania latifolia
Length = 96
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccactc 31
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccactc 27
>RF00247;mir-160;AAAA02022910.1/14752-14660 39946:Oryza sativa
Indica Group
Length = 93
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccactc 31
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccactc 27
>RF00247;mir-160;AAAA02020747.1/14884-14971 39946:Oryza sativa
Indica Group
Length = 88
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccactc 31
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccactc 27
>RF00247;mir-160;AC189245.2/87285-87372 51351:Brassica rapa subsp.
pekinensis
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 atgcctggctccctgtatgccac 29
|||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgccac 25
>RF00247;mir-160;AC183492.1/98297-98383 3712:Brassica oleracea
Length = 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 atgcctggctccctgtatgccac 29
|||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgccac 25
>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tatgcctggctccctgtatgcca 28
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccact 30
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccact 26
>RF00247;mir-160;ABIM01017407.1/6156-6071 3649:Carica papaya
(papaya)
Length = 86
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 atgcctggctccctgtatgcca 28
||||||||||||||||||||||
Sbjct: 3 atgcctggctccctgtatgcca 24
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 114 ggatggcgtgcgaggagccaagcatg 139
|||||||||||||||||||| |||||
Sbjct: 60 ggatggcgtgcgaggagccatgcatg 85
>RF00247;mir-160;Z97344.2/54320-54406 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccac 29
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;FM878703.1/301-387 213592:Musa acuminata subsp.
burmannicoides
Length = 87
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccac 29
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;EU974767.1/328-419 4577:Zea mays
Length = 92
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccac 29
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;EU975926.1/304-390 4577:Zea mays
Length = 87
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccac 29
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;ABXC01002436.1/220577-220488 4558:Sorghum bicolor
(sorghum)
Length = 90
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccac 29
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;AAAA02005231.1/55127-55040 39946:Oryza sativa
Indica Group
Length = 88
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccac 29
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;ABEU01007064.1/27442-27356 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tgcctggctccctgtatgccac 29
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25