miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AY551220.1/23-122 4530:Oryza sativa (rice)
Length = 100
Score = 198 bits (100), Expect = 1e-50
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 8 atatgcctggctccctgtatgccgctcgcatggctgccaacccaatgaactcgatctcgt 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgccgctcgcatggctgccaacccaatgaactcgatctcgt 60
Query: 68 tgttggccgctgcgtacggcgtgcgaggtgccaagcatgg 107
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgttggccgctgcgtacggcgtgcgaggtgccaagcatgg 100
>RF00247;mir-160;EU970393.1/2-98 4577:Zea mays
Length = 97
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 14 ctggctccctgtatgccgctcgcatggctgccaac 48
||||||||||||||||| |||||||||||||||||
Sbjct: 1 ctggctccctgtatgccactcgcatggctgccaac 35
>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 8 atatgcctggctccctgtatgccgctcgcatggctgccaac 48
||||||||||||||||||||||| ||||| | |||||||||
Sbjct: 1 atatgcctggctccctgtatgccactcgcttagctgccaac 41
>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 58.0 bits (29), Expect = 3e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 8 atatgcctggctccctgtatgccgctcgcatggctgccaacccaa 52
||||||||||||||||||||||| |||||| |||| ||| |||||
Sbjct: 1 atatgcctggctccctgtatgccactcgcacggctaccaccccaa 45
>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
Indica Group
Length = 136
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 8 atatgcctggctccctgtatgccgctcgcatggctgccaa 47
||||||||||||||||||||||| ||||| | ||||||||
Sbjct: 1 atatgcctggctccctgtatgccactcgcgtagctgccaa 40
>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
Length = 85
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 8 atatgcctggctccctgtatgccgctcgcatggct 42
||||||||||||||||||||||| |||||| ||||
Sbjct: 1 atatgcctggctccctgtatgccactcgcacggct 35
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 71 tggccgctgcgtacggcgtgcgaggtgccaagcatgg 107
||||||||||| |||||||||||||||||||||||
Sbjct: 49 tggccgctgcggctggcgtgcgaggtgccaagcatgg 85
>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
Length = 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 atatgcctggctccctgtatgcc 30
|||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcc 23
>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 atatgcctggctccctgtatgcc 30
|||||||||||||||||||||||
Sbjct: 1 atatgcctggctccctgtatgcc 23
>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
(papaya)
Length = 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcc 30
||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcc 23
>RF00247;mir-160;EU548646.1/366-280 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcc 30
||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcc 23
>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcc 30
||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcc 23
>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
trichocarpa
Length = 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcc 30
||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcc 23
>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
Length = 89
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcc 30
||||||||||||||||||||||
Sbjct: 1 tatgcctggctccctgtatgcc 22
>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
(castor bean)
Length = 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcc 30
||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcc 23
