miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AY551219.1/24-109 4530:Oryza sativa (rice)
Length = 86
Score = 170 bits (86), Expect = 2e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 8 cgctgcctggctccctgaatgccatccgagaagcgtgccgctgtggccggctgcttcctg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgctgcctggctccctgaatgccatccgagaagcgtgccgctgtggccggctgcttcctg 60
Query: 68 gttggcattgagggagtcatgcaggg 93
||||||||||||||||||||||||||
Sbjct: 61 gttggcattgagggagtcatgcaggg 86
>RF00247;mir-160;ABXC01005049.1/42369-42278 4558:Sorghum bicolor
(sorghum)
Length = 92
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 9 gctgcctggctccctgaatgccatccgaga 38
||||||||||||||||||||||||||||||
Sbjct: 2 gctgcctggctccctgaatgccatccgaga 31
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 67 ggttggcattgagggagtcatgcagg 92
||||||| ||||||||||||||||||
Sbjct: 66 ggttggcgttgagggagtcatgcagg 91
>RF00247;mir-160;AC161399.2/100084-100170 3880:Medicago truncatula
(barrel medic)
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgaatgccatccgagaagc 41
||||||||||||||||||||||| |||||||
Sbjct: 4 tgcctggctccctgaatgccatctgagaagc 34
