miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;AAAA02022630.1/18106-18247 39946:Oryza sativa Indica
Group
Length = 142
Score = 281 bits (142), Expect = 1e-75
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 7 aggaccgcgttggagaagcagggcacgtgcatgcatatgttcatcatcatcttcttcctc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggaccgcgttggagaagcagggcacgtgcatgcatatgttcatcatcatcttcttcctc 60
Query: 67 ctcctctagctccagccttgtgtgggttggaagtttagatagaactcgcactgcacgtgg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctcctctagctccagccttgtgtgggttggaagtttagatagaactcgcactgcacgtgg 120
Query: 127 tctccttctccatcccggtctt 148
||||||||||||||||||||||
Sbjct: 121 tctccttctccatcccggtctt 142
>RF00647;MIR164;ABXC01006220.1/150732-150882 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 17 tggagaagcagggcacgtgcatgcat 42
||||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcatgcat 36
>RF00647;MIR164;ABXC01001632.1/56279-56101 4558:Sorghum bicolor
(sorghum)
Length = 179
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 7 aggaccgcgttggagaagcagggcacgtgcatgc 40
|||||| || ||||||||||||||||||||||||
Sbjct: 1 aggaccacgctggagaagcagggcacgtgcatgc 34
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 119 gcacgtggtctccttctccatcccggtctt 148
||||||| |||||||||||||| |||||||
Sbjct: 150 gcacgtgttctccttctccatcacggtctt 179
>RF00647;MIR164;ABIM01003254.1/2406-2491 3649:Carica papaya
(papaya)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 gttggagaagcagggcacgtgca 37
|||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgca 31
>RF00647;MIR164;ABIM01024497.1/24000-24085 3649:Carica papaya
(papaya)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 gttggagaagcagggcacgtgca 37
|||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgca 31
>RF00647;MIR164;EU548715.1/244-341 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 gttggagaagcagggcacgtgca 37
|||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgca 31
>RF00647;MIR164;DQ090016.1/221-315 13451:Corylus avellana
Length = 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 gttggagaagcagggcacgtgca 37
|||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgca 31
>RF00647;MIR164;AC167403.2/113120-113214 3880:Medicago truncatula
(barrel medic)
Length = 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 gttggagaagcagggcacgtgca 37
|||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgca 31
>RF00647;MIR164;AC235335.1/132786-132675 3847:Glycine max
(soybean)
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 gttggagaagcagggcacgtgca 37
|||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgca 31
>RF00647;MIR164;CAAP02000002.1/260390-260272 29760:Vitis vinifera
Length = 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 gttggagaagcagggcacgtgca 37
|||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgca 31
>RF00647;MIR164;ABXC01006134.1/23615-23833 4558:Sorghum bicolor
(sorghum)
Length = 219
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 gttggagaagcagggcacgtgca 37
|||||||||||||||||||||||
Sbjct: 9 gttggagaagcagggcacgtgca 31
>RF00647;MIR164;EU421160.1/170-25 29780:Mangifera indica (mango)
Length = 146
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tggagaagcagggcacgtgcat 38
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;ABIM01008908.1/593-707 3649:Carica papaya (papaya)
Length = 115
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tggagaagcagggcacgtgcat 38
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;FM163716.1/40-210 3702:Arabidopsis thaliana (thale
cress)
Length = 171
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tggagaagcagggcacgtgcat 38
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;FM163713.1/40-209 3702:Arabidopsis thaliana (thale
cress)
Length = 170
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tggagaagcagggcacgtgcat 38
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;EU548743.1/136-304 3702:Arabidopsis thaliana
(thale cress)
Length = 169
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tggagaagcagggcacgtgcat 38
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;AARH01006944.1/110052-110208 3694:Populus
trichocarpa
Length = 157
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tggagaagcagggcacgtgcat 38
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;AASG02020922.1/1372-1495 3988:Ricinus communis
(castor bean)
Length = 124
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tggagaagcagggcacgtgcat 38
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;CAAP02000884.1/12240-12399 29760:Vitis vinifera
Length = 160
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tggagaagcagggcacgtgcat 38
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;FM162586.1/101-259 3451:Aquilegia vulgaris
Length = 159
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tggagaagcagggcacgtgcat 38
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;FM162587.1/172-265 310672:Cabomba aquatica
Length = 94
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tggagaagcagggcacgtgcat 38
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;FM162590.1/70-202 13333:Amborella trichopoda
Length = 133
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tggagaagcagggcacgtgcat 38
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;ABXC01006074.1/27552-27407 4558:Sorghum bicolor
(sorghum)
Length = 146
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tggagaagcagggcacgtgcat 38
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;AACV01011837.1/11132-11244 39947:Oryza sativa
Japonica Group
Length = 113
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tggagaagcagggcacgtgcat 38
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;AP008211.1/23198775-23198954 39947:Oryza sativa
Japonica Group
Length = 180
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tggagaagcagggcacgtgcat 38
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
