miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;AACV01011837.1/11132-11244 39947:Oryza sativa
Japonica Group
Length = 113
Score = 216 bits (109), Expect = 4e-56
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 1 gtgcacggtggagaagcagggcacgtgcattaccatccactcgcctgccggccgccggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gtgcacggtggagaagcagggcacgtgcattaccatccactcgcctgccggccgccggcc 62
Query: 61 gccattgccatggatggttcttcatgtgcccgtcttctccaccgagcac 109
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 gccattgccatggatggttcttcatgtgcccgtcttctccaccgagcac 111
>RF00647;MIR164;ABXC01006074.1/27552-27407 4558:Sorghum bicolor
(sorghum)
Length = 146
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 70 atggatggttcttcatgtgcccgtcttctccaccgagcac 109
|||||||||||||||||||||| |||||||||||||||||
Sbjct: 105 atggatggttcttcatgtgcccatcttctccaccgagcac 144
Score = 69.9 bits (35), Expect = 6e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 1 gtgcacggtggagaagcagggcacgtgcattaccatcca 39
||||| |||||||||||||||||||||||||||||||||
Sbjct: 3 gtgcatggtggagaagcagggcacgtgcattaccatcca 41
>RF00647;MIR164;AC226813.1/114113-114237 63629:Oryza minuta
Length = 125
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 71 tggatggttcttcatgtgcccgtcttctccaccgagcac 109
||||||| | |||||||| ||||||||||||||||||||
Sbjct: 85 tggatgggtgttcatgtgtccgtcttctccaccgagcac 123
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 gtgcacggtggagaagcagggcacgtg 27
||||| |||||||||||||||||||||
Sbjct: 3 gtgcagggtggagaagcagggcacgtg 29
>RF00647;MIR164;ABRL01001123.1/4697-4828 65489:Oryza barthii
Length = 132
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 71 tggatggttcttcatgtgcccgtcttctccaccgagcac 109
|||||||| |||||||| ||||||||||||||||||||
Sbjct: 92 tggatggtcgttcatgtgtccgtcttctccaccgagcac 130
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 gtgcacggtggagaagcagggcacgtg 27
||||| |||||||||||||||||||||
Sbjct: 3 gtgcagggtggagaagcagggcacgtg 29
>RF00647;MIR164;EU421160.1/170-25 29780:Mangifera indica (mango)
Length = 146
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tggagaagcagggcacgtgcattac 33
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;ABIM01008908.1/593-707 3649:Carica papaya (papaya)
Length = 115
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tggagaagcagggcacgtgcattac 33
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;FM163716.1/40-210 3702:Arabidopsis thaliana (thale
cress)
Length = 171
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tggagaagcagggcacgtgcattac 33
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;FM163713.1/40-209 3702:Arabidopsis thaliana (thale
cress)
Length = 170
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tggagaagcagggcacgtgcattac 33
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;EU548743.1/136-304 3702:Arabidopsis thaliana
(thale cress)
Length = 169
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tggagaagcagggcacgtgcattac 33
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;AARH01006944.1/110052-110208 3694:Populus
trichocarpa
Length = 157
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tggagaagcagggcacgtgcattac 33
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;AASG02020922.1/1372-1495 3988:Ricinus communis
(castor bean)
Length = 124
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tggagaagcagggcacgtgcattac 33
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;CAAP02000884.1/12240-12399 29760:Vitis vinifera
Length = 160
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tggagaagcagggcacgtgcattac 33
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;FM162586.1/101-259 3451:Aquilegia vulgaris
Length = 159
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tggagaagcagggcacgtgcattac 33
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;FM162587.1/172-265 310672:Cabomba aquatica
Length = 94
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tggagaagcagggcacgtgcattac 33
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;FM162590.1/70-202 13333:Amborella trichopoda
Length = 133
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tggagaagcagggcacgtgcattac 33
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;AP008211.1/23198775-23198954 39947:Oryza sativa
Japonica Group
Length = 180
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 ggtggagaagcagggcacgtgcatt 31
|||||||||||||||||||||||||
Sbjct: 9 ggtggagaagcagggcacgtgcatt 33
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1 gtgcacggtggagaagcagggcacgtgcat 30
|||||||||||||||| ||||||| |||||
Sbjct: 178 gtgcacggtggagaagaagggcacatgcat 149
>RF00647;MIR164;ABXC01006220.1/150732-150882 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 ggtggagaagcagggcacgtgcat 30
||||||||||||||||||||||||
Sbjct: 9 ggtggagaagcagggcacgtgcat 32
>RF00647;MIR164;ABXC01001632.1/56279-56101 4558:Sorghum bicolor
(sorghum)
Length = 179
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 4 cacggtggagaagcagggcacgtgcat 30
|||| ||||||||||||||||||||||
Sbjct: 6 cacgctggagaagcagggcacgtgcat 32
>RF00647;MIR164;FM162589.1/376-455 310672:Cabomba aquatica
Length = 80
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 ggtggagaagcagggcacgtgc 28
||||||||||||||||||||||
Sbjct: 9 ggtggagaagcagggcacgtgc 30
>RF00647;MIR164;AACV01012402.1/16189-16008 39947:Oryza sativa
Japonica Group
Length = 182
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1 gtgcacggtggagaagcagggcacgtgcat 30
|||||||||||||||| ||||||| |||||
Sbjct: 180 gtgcacggtggagaagaagggcacatgcat 151
>RF00647;MIR164;AAAA02022630.1/18106-18247 39946:Oryza sativa
Indica Group
Length = 142
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tggagaagcagggcacgtgcat 30
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
