miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;AP004257.3/77813-77720 39947:Oryza sativa Japonica
Group
Length = 94
Score = 186 bits (94), Expect = 3e-47
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 caaaccgtgctggagaagcagggcacgtgctcgacggcggggctggctggccggccggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caaaccgtgctggagaagcagggcacgtgctcgacggcggggctggctggccggccggct 60
Query: 61 tgcagcatgtgcgctccttctccagcatggcttc 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 tgcagcatgtgcgctccttctccagcatggcttc 94
>RF00647;MIR164;ABXC01002969.1/79278-79187 4558:Sorghum bicolor
(sorghum)
Length = 92
Score = 65.9 bits (33), Expect = 9e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 caaaccgtgctggagaagcagggcacgtgctcg 33
|||||||||||||||||||||||||||||||||
Sbjct: 1 caaaccgtgctggagaagcagggcacgtgctcg 33
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 62 gcagcatgtgcgctccttctccagcatggcttc 94
|||||| |||||||||||||||| |||||||||
Sbjct: 60 gcagcacgtgcgctccttctccaacatggcttc 92
>RF00647;MIR164;AC189657.2/5377-5278 51351:Brassica rapa subsp.
pekinensis
Length = 100
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tgctggagaagcagggcacgtgc 30
|||||||||||||||||||||||
Sbjct: 8 tgctggagaagcagggcacgtgc 30
>RF00647;MIR164;AC189579.2/50985-50886 51351:Brassica rapa subsp.
pekinensis
Length = 100
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tgctggagaagcagggcacgtgc 30
|||||||||||||||||||||||
Sbjct: 8 tgctggagaagcagggcacgtgc 30
>RF00647;MIR164;AARH01005550.1/339945-339862 3694:Populus
trichocarpa
Length = 84
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tgctggagaagcagggcacgtgc 30
|||||||||||||||||||||||
Sbjct: 8 tgctggagaagcagggcacgtgc 30
>RF00647;MIR164;AASG02000861.1/36470-36555 3988:Ricinus communis
(castor bean)
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tgctggagaagcagggcacgtgc 30
|||||||||||||||||||||||
Sbjct: 8 tgctggagaagcagggcacgtgc 30
>RF00647;MIR164;AASG02000423.1/48609-48498 3988:Ricinus communis
(castor bean)
Length = 112
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tgctggagaagcagggcacgtgc 30
|||||||||||||||||||||||
Sbjct: 8 tgctggagaagcagggcacgtgc 30
>RF00647;MIR164;FM162585.1/105-191 3451:Aquilegia vulgaris
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tgctggagaagcagggcacgtgc 30
|||||||||||||||||||||||
Sbjct: 8 tgctggagaagcagggcacgtgc 30
>RF00647;MIR164;FM162584.1/200-286 3451:Aquilegia vulgaris
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tgctggagaagcagggcacgtgc 30
|||||||||||||||||||||||
Sbjct: 8 tgctggagaagcagggcacgtgc 30
>RF00647;MIR164;FM162588.1/798-884 310672:Cabomba aquatica
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tgctggagaagcagggcacgtgc 30
|||||||||||||||||||||||
Sbjct: 8 tgctggagaagcagggcacgtgc 30
>RF00647;MIR164;AY871042.1/1-85 3694:Populus trichocarpa
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gctggagaagcagggcacgtgc 30
||||||||||||||||||||||
Sbjct: 1 gctggagaagcagggcacgtgc 22
>RF00647;MIR164;AY728400.1/2-73 3694:Populus trichocarpa
Length = 72
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gctggagaagcagggcacgtgc 30
||||||||||||||||||||||
Sbjct: 1 gctggagaagcagggcacgtgc 22
>RF00647;MIR164;CAAP02000007.1/54906-54816 29760:Vitis vinifera
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 2 aaaccgtgctggagaagcagggcacgtgct 31
||||| ||||||||||||||||||| ||||
Sbjct: 2 aaaccatgctggagaagcagggcacatgct 31
>RF00647;MIR164;FM162589.1/376-455 310672:Cabomba aquatica
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 5 ccgtgctggagaagcagggcacgtgc 30
||||| ||||||||||||||||||||
Sbjct: 5 ccgtggtggagaagcagggcacgtgc 30
>RF00647;MIR164;ABXC01001632.1/56279-56101 4558:Sorghum bicolor
(sorghum)
Length = 179
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gctggagaagcagggcacgtgc 30
||||||||||||||||||||||
Sbjct: 9 gctggagaagcagggcacgtgc 30
