miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;ABRL01001123.1/4697-4828 65489:Oryza barthii
Length = 132
Score = 254 bits (128), Expect = 3e-67
Identities = 131/132 (99%)
Strand = Plus / Plus
Query: 1 ttgtgcagggtggagaagcagggcacgtgagcggccatccagtgtagcttcgctgcgcgt 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 ttgtgcagggtggagaagcagggcacgtgagtggccatccagtgtagcttcgctgcgcgt 60
Query: 61 ccatggcggcgaacgcgcgtgatctggagtttggatggtcgttcatgtgtccgtcttctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccatggcggcgaacgcgcgtgatctggagtttggatggtcgttcatgtgtccgtcttctc 120
Query: 121 caccgagcactg 132
||||||||||||
Sbjct: 121 caccgagcactg 132
>RF00647;MIR164;AC226813.1/114113-114237 63629:Oryza minuta
Length = 125
Score = 147 bits (74), Expect = 4e-35
Identities = 117/132 (88%), Gaps = 7/132 (5%)
Strand = Plus / Plus
Query: 1 ttgtgcagggtggagaagcagggcacgtgagcggccatccagtgtagcttcgctgcgcgt 60
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 1 ttgtgcagggtggagaagcagggcacgtgaacggccatctagtgtagcttcgctgcgcgt 60
Query: 61 ccatggcggcgaacgcgcgtgatctggagtttggatggtcgttcatgtgtccgtcttctc 120
|||| ||||||||| ||| || ||||||||| ||||||||||||||||||||
Sbjct: 61 ccatagcggcgaacccgcatg-------ctttggatgggtgttcatgtgtccgtcttctc 113
Query: 121 caccgagcactg 132
||||||||||||
Sbjct: 114 caccgagcactg 125
>RF00647;MIR164;ABXC01000623.1/193437-193304 4558:Sorghum bicolor
(sorghum)
Length = 134
Score = 69.9 bits (35), Expect = 8e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 1 ttgtgcagggtggagaagcagggcacgtgagcggccatccagt 43
|||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 1 ttgtgcagggtggagaagcaggacacgtgagcgaccatccagt 43
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 91 ttggatggtcgttcatgtgtccgtcttctccaccgagcac 130
|||| |||||| ||||||||||||| ||||||||||||||
Sbjct: 93 ttgggtggtcgctcatgtgtccgtcctctccaccgagcac 132
>RF00647;MIR164;AACV01011837.1/11132-11244 39947:Oryza sativa
Japonica Group
Length = 113
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 92 tggatggtcgttcatgtgtccgtcttctccaccgagcac 130
|||||||| |||||||| ||||||||||||||||||||
Sbjct: 73 tggatggttcttcatgtgcccgtcttctccaccgagcac 111
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 gtgcagggtggagaagcagggcacgtg 29
||||| |||||||||||||||||||||
Sbjct: 3 gtgcacggtggagaagcagggcacgtg 29
>RF00647;MIR164;ABXC01006074.1/27552-27407 4558:Sorghum bicolor
(sorghum)
Length = 146
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 tgtgcagggtggagaagcagggcacgtg 29
|||||| |||||||||||||||||||||
Sbjct: 2 tgtgcatggtggagaagcagggcacgtg 29
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 92 tggatggtcgttcatgtgtccgtcttctccaccgagcac 130
|||||||| |||||||| || |||||||||||||||||
Sbjct: 106 tggatggttcttcatgtgcccatcttctccaccgagcac 144
