miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AP004125.3/115293-115185 39947:Oryza sativa
Japonica Group
Length = 109
Score = 216 bits (109), Expect = 5e-56
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 6 cttgtggggaatgttggctggctcgaggtatccacatcttaattcctctccggcgatcga 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttgtggggaatgttggctggctcgaggtatccacatcttaattcctctccggcgatcga 60
Query: 66 gccggctcgggcgtgtggaagcgtcggaccaggcttcattcctcgcaag 114
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gccggctcgggcgtgtggaagcgtcggaccaggcttcattcctcgcaag 109
>RF00075;mir-166;ABXC01002961.1/62497-62388 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 7 ttgtggggaatgttggctggctcgaggtatcc 38
||||||||||||||||||||||||||| ||||
Sbjct: 2 ttgtggggaatgttggctggctcgaggcatcc 33
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 86 gcgtcggaccaggcttcattcctcgcaa 113
||||||||||||||||||||||||||||
Sbjct: 82 gcgtcggaccaggcttcattcctcgcaa 109
>RF00075;mir-166;CAAP02001545.1/66166-66077 29760:Vitis vinifera
Length = 90
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 ttgtggggaatgttggctggctcgagg 33
|||||||||||||||||||||||||||
Sbjct: 2 ttgtggggaatgttggctggctcgagg 28
>RF00075;mir-166;BT056134.1/149-273 4577:Zea mays
Length = 125
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 ttgtggggaatgttggctggctcgagg 33
|||||||||||||||||||||||||||
Sbjct: 2 ttgtggggaatgttggctggctcgagg 28
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 86 gcgtcggaccaggcttcattcctcgcaa 113
|||||||||||||| |||||||||||||
Sbjct: 97 gcgtcggaccaggcctcattcctcgcaa 124
>RF00075;mir-166;AM485267.2/15969-16057 29760:Vitis vinifera
Length = 89
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 11 ggggaatgttggctggctcgaggtatccacat 42
||||||||||||||||||||||| || |||||
Sbjct: 6 ggggaatgttggctggctcgaggcattcacat 37
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 88 gtcggaccaggcttcattcctc 109
||||||||||||||||||||||
Sbjct: 63 gtcggaccaggcttcattcctc 84
>RF00075;mir-166;ABIM01027778.1/12902-13001 3649:Carica papaya
(papaya)
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ggggaatgttggctggctcgagg 33
|||||||||||||||||||||||
Sbjct: 6 ggggaatgttggctggctcgagg 28
>RF00075;mir-166;AC140029.19/70272-70377 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ggggaatgttggctggctcgagg 33
|||||||||||||||||||||||
Sbjct: 6 ggggaatgttggctggctcgagg 28
>RF00075;mir-166;BABK01014008.1/1570-1448 34305:Lotus japonicus
Length = 123
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ggggaatgttggctggctcgagg 33
|||||||||||||||||||||||
Sbjct: 6 ggggaatgttggctggctcgagg 28
