miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AP004125.3/115130-115014 39947:Oryza sativa
Japonica Group
Length = 117
Score = 232 bits (117), Expect = 9e-61
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 6 gttaaggggtttgttgtctggctcgaggcatccgggactccggtttctcctttcctactg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttaaggggtttgttgtctggctcgaggcatccgggactccggtttctcctttcctactg 60
Query: 66 gaggcgcctaatttccggcgagctcggagcctcggaccaggcttcaatccctttaac 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaggcgcctaatttccggcgagctcggagcctcggaccaggcttcaatccctttaac 117
>RF00075;mir-166;AAAA02007467.1/8861-8977 39946:Oryza sativa Indica
Group
Length = 117
Score = 208 bits (105), Expect = 1e-53
Identities = 114/117 (97%)
Strand = Plus / Plus
Query: 6 gttaaggggtttgttgtctggctcgaggcatccgggactccggtttctcctttcctactg 65
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 gttaaggggtttgttgtctggctcgaggcatccgggactccggtttctccttacctactg 60
Query: 66 gaggcgcctaatttccggcgagctcggagcctcggaccaggcttcaatccctttaac 122
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaggcgcctagcttccggcgagctcggagcctcggaccaggcttcaatccctttaac 117
>RF00075;mir-166;BT056134.1/436-541 4577:Zea mays
Length = 106
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 96 ctcggaccaggcttcaatccctttaac 122
|||||||||||||||||||||||||||
Sbjct: 80 ctcggaccaggcttcaatccctttaac 106
>RF00075;mir-166;ABXC01001421.1/165860-165981 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 96 ctcggaccaggcttcaatccctttaac 122
|||||||||||||||||||||||||||
Sbjct: 96 ctcggaccaggcttcaatccctttaac 122
>RF00075;mir-166;AY551232.1/7-113 4530:Oryza sativa (rice)
Length = 107
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 96 ctcggaccaggcttcaatccctttaac 122
|||||||||||||||||||||||||||
Sbjct: 81 ctcggaccaggcttcaatccctttaac 107
>RF00075;mir-166;ABXC01002961.1/62223-62119 4558:Sorghum bicolor
(sorghum)
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 97 tcggaccaggcttcaatccctttaac 122
||||||||||||||||||||||||||
Sbjct: 80 tcggaccaggcttcaatccctttaac 105
>RF00075;mir-166;AAAA02025700.1/14722-14582 39946:Oryza sativa
Indica Group
Length = 141
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 95 cctcggaccaggcttcaatccctttaac 122
||||||||||||||||| ||||||||||
Sbjct: 114 cctcggaccaggcttcattccctttaac 141
>RF00075;mir-166;AACV01018689.1/7378-7519 39947:Oryza sativa
Japonica Group
Length = 142
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 95 cctcggaccaggcttcaatccctttaac 122
||||||||||||||||| ||||||||||
Sbjct: 115 cctcggaccaggcttcattccctttaac 142
