miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AC096855.5/123486-123562 39947:Oryza sativa
Japonica Group
Length = 77
Score = 153 bits (77), Expect = 5e-37
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 13 gttgagaggaatgacgtccggtctgaagatcgccgtccccaggcggtggcttcggaccag 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttgagaggaatgacgtccggtctgaagatcgccgtccccaggcggtggcttcggaccag 60
Query: 73 gcttcattccccatgac 89
|||||||||||||||||
Sbjct: 61 gcttcattccccatgac 77
>RF00075;mir-166;ABXC01000087.1/360026-360107 4558:Sorghum bicolor
(sorghum)
Length = 82
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 54 ggcggtggcttcggaccaggcttcattccccatgac 89
||||| ||||||||||||||||||||||||||||||
Sbjct: 47 ggcggcggcttcggaccaggcttcattccccatgac 82
>RF00075;mir-166;AK252042.1/8-95 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 88
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 63 ttcggaccaggcttcattccccatgac 89
|||||||||||||||||||||||||||
Sbjct: 62 ttcggaccaggcttcattccccatgac 88
>RF00075;mir-166;ABIM01027778.1/12902-13001 3649:Carica papaya
(papaya)
Length = 100
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 ggcttcggaccaggcttcattcccc 84
|||||||||||||||||||||||||
Sbjct: 71 ggcttcggaccaggcttcattcccc 95
>RF00075;mir-166;AC216447.1/33512-33607 3694:Populus trichocarpa
Length = 96
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 ggcttcggaccaggcttcattcccc 84
|||||||||||||||||||||||||
Sbjct: 67 ggcttcggaccaggcttcattcccc 91
>RF00075;mir-166;AC140029.19/70272-70377 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 ggcttcggaccaggcttcattcccc 84
|||||||||||||||||||||||||
Sbjct: 77 ggcttcggaccaggcttcattcccc 101
>RF00075;mir-166;BABK01014008.1/1570-1448 34305:Lotus japonicus
Length = 123
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 ggcttcggaccaggcttcattcccc 84
|||||||||||||||||||||||||
Sbjct: 94 ggcttcggaccaggcttcattcccc 118
>RF00075;mir-166;CAAP02001545.1/66166-66077 29760:Vitis vinifera
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 gcttcggaccaggcttcattcccc 84
||||||||||||||||||||||||
Sbjct: 62 gcttcggaccaggcttcattcccc 85
>RF00075;mir-166;ABEU01002487.1/1609-1703 145481:Physcomitrella
patens subsp. patens
Length = 95
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 gcttcggaccaggcttcattcccc 84
||||||||||||||||||||||||
Sbjct: 67 gcttcggaccaggcttcattcccc 90
>RF00075;mir-166;ABEU01002053.1/8010-8104 145481:Physcomitrella
patens subsp. patens
Length = 95
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 gcttcggaccaggcttcattcccc 84
||||||||||||||||||||||||
Sbjct: 67 gcttcggaccaggcttcattcccc 90
>RF00075;mir-166;ABEU01001509.1/36651-36730 145481:Physcomitrella
patens subsp. patens
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 gcttcggaccaggcttcattcccc 84
||||||||||||||||||||||||
Sbjct: 52 gcttcggaccaggcttcattcccc 75
>RF00075;mir-166;ABEU01008046.1/36531-36607 145481:Physcomitrella
patens subsp. patens
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 gcttcggaccaggcttcattcccc 84
||||||||||||||||||||||||
Sbjct: 49 gcttcggaccaggcttcattcccc 72
>RF00075;mir-166;ABEU01002839.1/114707-114612
145481:Physcomitrella patens subsp. patens
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 gcttcggaccaggcttcattcccc 84
||||||||||||||||||||||||
Sbjct: 68 gcttcggaccaggcttcattcccc 91
>RF00075;mir-166;ABEU01001509.1/36829-36913 145481:Physcomitrella
patens subsp. patens
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 gcttcggaccaggcttcattcccc 84
||||||||||||||||||||||||
Sbjct: 57 gcttcggaccaggcttcattcccc 80
>RF00075;mir-166;EU548832.1/235-380 3702:Arabidopsis thaliana (thale
cress)
Length = 146
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 cttcggaccaggcttcattcccc 84
|||||||||||||||||||||||
Sbjct: 119 cttcggaccaggcttcattcccc 141
>RF00075;mir-166;CU302248.6/62232-62044 3880:Medicago truncatula
(barrel medic)
Length = 189
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 cttcggaccaggcttcattcccc 84
|||||||||||||||||||||||
Sbjct: 162 cttcggaccaggcttcattcccc 184
>RF00075;mir-166;ABIM01012128.1/12128-12036 3649:Carica papaya
(papaya)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 63 ttcggaccaggcttcattcccc 84
||||||||||||||||||||||
Sbjct: 67 ttcggaccaggcttcattcccc 88
>RF00075;mir-166;AARH01001058.1/130278-130374 3694:Populus
trichocarpa
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 63 ttcggaccaggcttcattcccc 84
||||||||||||||||||||||
Sbjct: 71 ttcggaccaggcttcattcccc 92
>RF00075;mir-166;AASG02007713.1/11405-11313 3988:Ricinus communis
(castor bean)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 63 ttcggaccaggcttcattcccc 84
||||||||||||||||||||||
Sbjct: 67 ttcggaccaggcttcattcccc 88
>RF00075;mir-166;BABK01039514.1/607-703 34305:Lotus japonicus
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 63 ttcggaccaggcttcattcccc 84
||||||||||||||||||||||
Sbjct: 71 ttcggaccaggcttcattcccc 92
>RF00075;mir-166;CAAP02000553.1/130979-130890 29760:Vitis vinifera
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 63 ttcggaccaggcttcattcccc 84
||||||||||||||||||||||
Sbjct: 64 ttcggaccaggcttcattcccc 85
>RF00075;mir-166;ABXC01000715.1/152379-152276 4558:Sorghum bicolor
(sorghum)
Length = 104
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 63 ttcggaccaggcttcattcccc 84
||||||||||||||||||||||
Sbjct: 78 ttcggaccaggcttcattcccc 99
>RF00075;mir-166;AAAA02007901.1/15784-15895 39946:Oryza sativa
Indica Group
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 63 ttcggaccaggcttcattcccc 84
||||||||||||||||||||||
Sbjct: 86 ttcggaccaggcttcattcccc 107
>RF00075;mir-166;ABEU01015165.1/9230-9152 145481:Physcomitrella
patens subsp. patens
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 63 ttcggaccaggcttcattcccc 84
||||||||||||||||||||||
Sbjct: 53 ttcggaccaggcttcattcccc 74
>RF00075;mir-166;ABEU01003209.1/178750-178656
145481:Physcomitrella patens subsp. patens
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 63 ttcggaccaggcttcattcccc 84
||||||||||||||||||||||
Sbjct: 69 ttcggaccaggcttcattcccc 90
