miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;CT828788.1/88-212 39946:Oryza sativa Indica Group
Length = 125
Score = 149 bits (75), Expect = 1e-35
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 46 ccacctctctcatctgtgttcttgattaattacggatcaatcgatcaggtcatgctgtag 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 ccacctctctcatctgtgttcttgattaattacggatcaatcgatcaggtcatgctgtag 108
Query: 106 tttcatctgctggtt 120
|||||||||||||||
Sbjct: 109 tttcatctgctggtt 123
>RF00640;MIR167_1;BT062276.1/99-327 4577:Zea mays
Length = 229
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 91 caggtcatgctgtagtttcatctgctggt 119
|||||||||||||||||||||||||||||
Sbjct: 198 caggtcatgctgtagtttcatctgctggt 226
>RF00640;MIR167_1;EU944277.1/110-337 4577:Zea mays
Length = 228
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 91 caggtcatgctgtagtttcatctgctggt 119
|||||||||||||||||||||||||||||
Sbjct: 197 caggtcatgctgtagtttcatctgctggt 225
>RF00640;MIR167_1;ABXC01005647.1/68869-69033 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 89 atcaggtcatgctgtagtttcatctgctggt 119
|||||||||||||||||||||||| ||||||
Sbjct: 132 atcaggtcatgctgtagtttcatccgctggt 162
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 cacaagttggtgaagctgccagc 23
|||||||||||||||||||||||
Sbjct: 4 cacaagttggtgaagctgccagc 26
