miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;AP004886.3/116669-116566 39947:Oryza sativa
Japonica Group
Length = 104
Score = 172 bits (87), Expect = 5e-43
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcc 68
Query: 61 cgccttgcaccaagtgaatcggagccg 87
|||||||||||||||||||||||||||
Sbjct: 69 cgccttgcaccaagtgaatcggagccg 95
>RF00677;MIR168;BT069329.1/34-135 4577:Zea mays
Length = 102
Score = 109 bits (55), Expect = 6e-24
Identities = 81/87 (93%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 1 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcc 60
||||||||||||||||||||||||||||||||||||||| | || | | ||| |||||||
Sbjct: 9 cgcctcgggctcgcttggtgcagatcgggacccgccgcc-cggccgac-gggacggatcc 66
Query: 61 cgccttgcaccaagtgaatcggagccg 87
|||||||||||||||||||||||||||
Sbjct: 67 cgccttgcaccaagtgaatcggagccg 93
>RF00677;MIR168;ABXC01002411.1/32850-32747 4558:Sorghum bicolor
(sorghum)
Length = 104
Score = 79.8 bits (40), Expect = 5e-15
Identities = 78/88 (88%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 1 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgct-gccggggccggatc 59
|||||||||||||||||||||||||||||||| ||||||| ||| | ||| | ||||
Sbjct: 9 cgcctcgggctcgcttggtgcagatcgggacctgccgccg-tgctcggacgggacagatc 67
Query: 60 ccgccttgcaccaagtgaatcggagccg 87
||||||||||||||||||||| ||||||
Sbjct: 68 ccgccttgcaccaagtgaatccgagccg 95
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 55 ggatcccgccttgcaccaagtgaatcggagcc 86
||||||||||||||| ||| ||||||||||||
Sbjct: 96 ggatcccgccttgcatcaactgaatcggagcc 127
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 55 ggatcccgccttgcaccaagtgaatcggagcc 86
||||||||||||||| ||| ||||||||||||
Sbjct: 96 ggatcccgccttgcatcaactgaatcggagcc 127
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 55 ggatcccgccttgcaccaagtgaatcggagcc 86
||||||||||||||| ||| ||||||||||||
Sbjct: 97 ggatcccgccttgcatcaactgaatcggagcc 128
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 55 ggatcccgccttgcaccaagtgaatcggagcc 86
||||||||||||||| ||| ||||||||||||
Sbjct: 94 ggatcccgccttgcatcaactgaatcggagcc 125
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 54 cggatcccgccttgcaccaagtgaatcggag 84
|||||||||||||||| ||| ||||||||||
Sbjct: 94 cggatcccgccttgcatcaactgaatcggag 124
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 ggatcccgccttgcaccaagtgaatcggag 84
||||||||||||||| ||| ||||||||||
Sbjct: 35 ggatcccgccttgcatcaactgaatcggag 64
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
pekinensis
Length = 137
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 ggatcccgccttgcaccaagtgaatcggag 84
||||||||||||||| ||| ||||||||||
Sbjct: 94 ggatcccgccttgcatcaaatgaatcggag 123
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 ggatcccgccttgcaccaagtgaatcggag 84
||||||||||||||| ||| ||||||||||
Sbjct: 138 ggatcccgccttgcatcaactgaatcggag 167
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 ggatcccgccttgcaccaagtgaatcggag 84
||||||||||||||| ||| ||||||||||
Sbjct: 114 ggatcccgccttgcatcaactgaatcggag 143
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 ggatcccgccttgcaccaagtgaatcggag 84
||||||||||||||| ||| ||||||||||
Sbjct: 80 ggatcccgccttgcatcaactgaatcggag 109
